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Updated: Aug 15, 2025

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
Published on: September 17, 2021
Diffusion theory of molecular liquids in the energy representation and application to solvation dynamics
Kazuya Okita1, Kento Kasahara1, Nobuyuki Matubayasi1
1Division of Chemical Engineering, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan.
Abstract:
The generalized Langevin equation (GLE) formalism is a useful theoretical fundament for analyzing dynamical phenomena rigorously. Despite the systematic formulation of dynamics theories with practical approximations, however, the applicability of GLE-based methods is still limited to simple polyatomic liquids due to the approximate treatment of molecular orientations involved in the static molecular liquid theory. Here, we propose an exact framework of dynamics based on the GLE formalism incorporating the energy representation theory of solution, an alternative static molecular liquid theory. A fundamental idea is the projection of the relative positions and orientations of solvents around a solute onto the solute-solvent interaction, namely the energy coordinate, enabling us to describe the dynamics on a one-dimensional coordinate. Introducing systematic approximations, such as the overdamped limit, leads to the molecular diffusion equation in the energy representation that is described in terms of the distribution function of solvents on the energy coordinate and the diffusion coefficients. The present theory is applied to the solvation dynamics triggered by the photoexcitation of benzonitrile. The long-time behavior of the solvation time correlation function is in good agreement with that obtained by the molecular dynamics simulation.
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