The nucleoprotein of influenza A virus inhibits the innate immune response by inducing mitophagy
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Updated: Aug 15, 2025

Affinity Purification of Influenza Virus Ribonucleoprotein Complexes from the Chromatin of Infected Cells
Published on: June 3, 2012
Bo Zhang1,2, Shuai Xu1, Minxuan Liu1,2
1State Key Laboratory of Veterinary Etiological Biology, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, PR China.
Abstract:
Mitophagy is a form of autophagy that plays a key role in maintaining the homeostasis of functional mitochondria in the cell. Viruses have evolved various strategies to manipulate mitophagy to escape host immune responses and promote virus replication. In this study, the nucleoprotein (NP) of H1N1 virus (PR8 strain) was identified as a regulator of mitophagy. We revealed that NP-mediated mitophagy leads to the degradation of the mitochondria-anchored protein MAVS, thereby blocking MAVS-mediated antiviral signaling and promoting virus replication. The NP-mediated mitophagy is dependent on the interaction of NP with MAVS and the cargo receptor TOLLIP. Moreover, Y313 of NP is a key residue for the MAVS-NP interaction and NP-mediated mitophagy. The NPY313F mutation significantly attenuates the virus-induced mitophagy and the virus replication in vitro and in vivo. Taken together, our findings uncover a novel mechanism by which the NP of influenza virus induces mitophagy to attenuate innate immunity.Abbreviations: ACTB: actin beta; ATG7: autophagy related 7; ATG12: autophagy related 12; CCCP: carbonyl cyanide 3-chlorophenyl hydrazone; co-IP: co-immunoprecipitation; COX4/COXIV: cytochrome c oxidase subunit 4; DAPI: 4',6-diamidino-2-phenylindole, dihydrochloride; EID50: 50% egg infective dose; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; GFP: green fluorescent protein; HEK: human embryonic kidney; hpi: hours post-infection; IAV: influenza A virus; IFN: interferon; IP: immunoprecipitation; LAMP1: lysosomal associated membrane protein 1; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MAVS: mitochondrial antiviral signaling protein; Mdivi-1: mitochondrial division inhibitor 1; MLD50: 50% mouse lethal dose; MOI: multiplicity of infection; NBR1: NBR1 autophagy cargo receptor; NP: nucleoprotein; PB1: basic polymerase 1; RFP: red fluorescent protein; RIGI: RNA sensor RIG-I; RIGI-N: RIGI-CARD; SeV: Sendai virus; SQSTM1/p62: sequestosome 1; TIMM23: translocase of inner mitochondrial membrane 23; TOLLIP: toll interacting protein; TOMM20: translocase of outer mitochondrial membrane 20; TUBA: tubulin alpha; Vec: empty vector; vRNP: viral ribonucleoprotein.
Insights
Influenza virus nucleoprotein (NP) hijacks mitophagy to degrade MAVS, blocking antiviral defenses and promoting viral replication. A specific NP mutation (Y313F) impairs this process, reducing viral spread.
Area of Science:
- Cell Biology
- Virology
- Immunology
Background:
- Mitophagy, a selective form of autophagy, is crucial for mitochondrial quality control.
- Viruses exploit cellular processes, including mitophagy, to evade host immunity and facilitate replication.
Purpose of the Study:
- To investigate the role of H1N1 influenza virus nucleoprotein (NP) in regulating mitophagy.
- To elucidate the mechanism by which NP manipulates mitophagy to promote viral replication and inhibit antiviral responses.
Main Methods:
- Co-immunoprecipitation assays to identify protein interactions.
- Western blotting and microscopy to assess mitophagy and protein degradation.
- Viral replication assays in vitro and in vivo.
- Site-directed mutagenesis to study the role of specific NP residues.
Main Results:
- H1N1 virus NP was identified as a regulator of mitophagy.
- NP induces mitophagy, leading to the degradation of mitochondrial antiviral signaling protein (MAVS).
- This degradation blocks MAVS-mediated antiviral signaling, promoting influenza A virus (IAV) replication.
- The interaction between NP and MAVS, mediated by cargo receptor TOLLIP, is essential for NP-induced mitophagy.
- A key residue, Y313 in NP, is critical for MAVS-NP interaction and mitophagy induction.
- Mutation of Y313 to Phenylalanine (NPY313F) significantly reduces virus-induced mitophagy and viral replication.
Conclusions:
- Influenza virus NP utilizes mitophagy as a novel mechanism to suppress innate immunity.
- NP-mediated degradation of MAVS through mitophagy is a key viral strategy to attenuate host antiviral defenses.
- Targeting the NP-MAVS interaction or NP-mediated mitophagy could be a potential therapeutic strategy against influenza infections.
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