Related Experiment Video
Updated: Aug 15, 2025

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Characterization of the novel temperate Staphylococcus haemolyticus phage IME1365_01
Huanao Qiao1, Yunjia Hu1, Fengjuan Tian1
1College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China.
Abstract:
The presence of a novel functional prophage, IME1365_01, was predicted from bacterial high-throughput sequencing data and then successfully induced from Staphylococcus haemolyticus by mitomycin C treatment. Transmission electron microscopy showed that phage IME1365_01 has an icosahedral head (43 nm in diameter) and a long tail (172 nm long). This phage possesses a double-stranded DNA genome of 44,875 bp with a G+C content of 35.35%. A total of 63 putative open reading frames (ORFs) were identified in its genome. BLASTn analysis revealed that IME1365_01 is similar to Staphylococcus phage vB_SepS_E72, but with a genome homology coverage of only 26%. The phage genome does not have fixed termini. In ORF24 of phage IME1365_01, a conserved Toll-interleukin-1 receptor domain of the TIR_2 superfamily (accession no. c123749) is located at its N-terminus, and this might serve as a component of an anti-bacterial system. In conclusion, we developed a platform to obtain active temperate phage from prediction, identification, and induction from its bacterial host. After mass screening using this platform, numerous temperate phages and their innate anti-bacterial elements can provide extensive opportunities for therapy against bacterial (especially drug-resistant bacterial) infections.
Insights
Researchers identified a novel Staphylococcus phage, IME1365_01, using a new platform. This discovery offers potential for developing new therapies against bacterial infections, including drug-resistant strains.
Area of Science:
- Microbiology
- Bacteriology
- Virology
Background:
- Bacterial infections, particularly those caused by drug-resistant strains, pose a significant global health challenge.
- Temperate phages represent a promising avenue for therapeutic interventions against bacteria.
- Efficient methods for discovering and characterizing novel phages are crucial for advancing phage therapy.
Purpose of the Study:
- To develop and validate a platform for predicting, identifying, and inducing novel functional temperate phages from bacterial hosts.
- To characterize the morphology, genome, and potential antimicrobial components of a newly discovered Staphylococcus phage, IME1365_01.
Main Methods:
- Bacterial high-throughput sequencing for phage prediction.
- Mitomycin C induction for phage isolation.
- Transmission electron microscopy for phage morphology.
- Genome sequencing and bioinformatic analysis (BLASTn, ORF identification).
Main Results:
- Successfully induced a novel functional temperate phage, IME1365_01, from Staphylococcus haemolyticus.
- IME1365_01 possesses an icosahedral head (43 nm) and a long tail (172 nm), with a dsDNA genome of 44,875 bp.
- The genome contains 63 putative ORFs, including one (ORF24) with a Toll-interleukin-1 receptor domain, potentially involved in anti-bacterial activity.
- Phage IME1365_01 shows limited homology (26%) to known Staphylococcus phages.
Conclusions:
- A robust platform for obtaining active temperate phages from prediction to induction has been established.
- The characterized phage IME1365_01 and its anti-bacterial elements hold potential for therapeutic applications against bacterial infections.
- Mass screening using this platform can yield numerous temperate phages for combating drug-resistant bacterial infections.
Related Concept Videos
DNA Bacteriophages
Viral Replication: Lytic Cycle
Lytic Cycle of Bacteriophages
Lysogenic Cycle of Bacteriophages
Viral Replication: Lysogenic Cycle
Bacterial Phylum Tenericutes

