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Purification of High Molecular Weight Genomic DNA from Powdery Mildew for Long-Read Sequencing
Published on: March 31, 2017
Mitochondrial characteristics of the powdery mildew genus Erysiphe revealed an extraordinary evolution in
Xiaobei Ji1, Ye Tian1, Wenbo Liu1
1School of Plant Protection, Hainan University/Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests (Hainan University), Ministry of Education, Haikou, Hainan 570228, China.
Abstract:
The genus Erysiphe was an obligate parasite causing powdery mildew disease on a wide range of higher plants. However, the knowledge of their mitogenome architecture for lifestyle adaptability was scarce. Here, we assembled the first complete mitogenome (190,559 bp in size) for rubber tree powdery mildew pathogen Erysiphe quercicola. Comparable analysis of the Erysiphe mitogenomes exhibited conserved gene content, genome organization and codon usage bias, but extensive dynamic intron gain/loss events were presented between Erysiphe species. The phylogeny of the Ascomycota species constructed in the phylogenetic analysis showed genetic divergences of the Erysiphe species. Compared with other distant saprophytic and plant pathogenic fungi, Erysiphe had a flat distribution of evolutionary pressures on fungal standard protein-coding genes (PCGs). The Erysiphe PCGs had the highest mean selection pressure. In particular, Erysiphe's cox1, nad1, cob and rps3 genes had the most elevated selection pressures among corresponding PCGs across fungal genera. Altogether, the investigations provided a novel insight into the potential evolutionary pattern of the genus Erysiphe to adapt obligate biotrophic lifestyle and promoted the understanding of the high plasticity and population evolution of fungal mitogenomes.
Insights
The first complete mitogenome for Erysiphe quercicola, a powdery mildew pathogen, reveals conserved gene content but dynamic intron evolution. This study offers insights into the evolutionary patterns enabling Erysiphe
Area of Science:
- Mycology
- Plant Pathology
- Genomics
Background:
- The genus Erysiphe comprises obligate parasites responsible for powdery mildew diseases in numerous plant species.
- Limited knowledge exists regarding the mitogenome architecture of Erysiphe and its role in lifestyle adaptability.
Purpose of the Study:
- To assemble and analyze the first complete mitochondrial genome (mitogenome) of the rubber tree powdery mildew pathogen, Erysiphe quercicola.
- To investigate the evolutionary patterns and genomic plasticity of Erysiphe mitogenomes in relation to their obligate biotrophic lifestyle.
Main Methods:
- Whole-genome sequencing and assembly of the Erysiphe quercicola mitogenome.
- Comparative analysis of mitogenome architecture, gene content, and codon usage bias across Erysiphe species.
- Phylogenetic analysis of Ascomycota species to understand genetic divergence.
- Analysis of evolutionary pressures on fungal protein-coding genes (PCGs).
Main Results:
- The complete mitogenome of Erysiphe quercicola was assembled (190,559 bp).
- Comparative analysis revealed conserved gene content and genome organization but extensive dynamic intron gain/loss events among Erysiphe species.
- Erysiphe species exhibited a flat distribution of evolutionary pressures on PCGs, with particularly high selection pressures on cox1, nad1, cob, and rps3 genes.
Conclusions:
- The findings provide novel insights into the evolutionary patterns enabling the obligate biotrophic lifestyle of the Erysiphe genus.
- The study highlights the high plasticity and population evolution of fungal mitogenomes, particularly in Erysiphe.
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