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Published on: June 7, 2024
DPC29 promotes post-initiation mitochondrial translation in Saccharomyces cerevisiae
Kyle A Hubble1,2, Michael F Henry1,2
1Department of Molecular Biology, Rowan University School of Osteopathic Medicine, Stratford, NJ 08084, USA.
Abstract:
Mitochondrial ribosomes synthesize essential components of the oxidative phosphorylation (OXPHOS) system in a tightly regulated process. In the yeast Saccharomyces cerevisiae, mitochondrial mRNAs require specific translational activators, which orchestrate protein synthesis by recognition of their target gene's 5'-untranslated region (UTR). Most of these yeast genes lack orthologues in mammals, and only one such gene-specific translational activator has been proposed in humans-TACO1. The mechanism by which TACO1 acts is unclear because mammalian mitochondrial mRNAs do not have significant 5'-UTRs, and therefore must promote translation by alternative mechanisms. In this study, we examined the role of the TACO1 orthologue in yeast. We found this 29 kDa protein to be a general mitochondrial translation factor, Dpc29, rather than a COX1-specific translational activator. Its activity was necessary for the optimal expression of OXPHOS mtDNA reporters, and mutations within the mitoribosomal large subunit protein gene MRP7 produced a global reduction of mitochondrial translation in dpc29Δ cells, indicative of a general mitochondrial translation factor. Northern-based mitoribosome profiling of dpc29Δ cells showed higher footprint frequencies at the 3' ends of mRNAs, suggesting a role in translation post-initiation. Additionally, human TACO1 expressed at native levels rescued defects in dpc29Δ yeast strains, suggesting that the two proteins perform highly conserved functions.
Insights
The yeast protein Dpc29, a homolog of human TACO1, is a general mitochondrial translation factor, not a specific activator. It is essential for optimal oxidative phosphorylation (OXPHOS) gene expression in yeast.
Area of Science:
- Mitochondrial biology
- Molecular genetics
- Protein synthesis
Background:
- Mitochondrial ribosomes synthesize oxidative phosphorylation (OXPHOS) proteins.
- Yeast mitochondrial mRNAs require specific translational activators.
- Human TACO1 is the only proposed mammalian mitochondrial translational activator, but its mechanism is unclear due to short 5'-UTRs.
Purpose of the Study:
- To investigate the function of the yeast TACO1 orthologue.
- To determine if the yeast TACO1 orthologue acts as a COX1-specific activator or a general translation factor.
Main Methods:
- Characterization of the yeast TACO1 orthologue (Dpc29).
- Analysis of OXPHOS gene expression in dpc29Δ yeast strains.
- Mitoribosome profiling in dpc29Δ cells.
- Functional complementation of dpc29Δ yeast with human TACO1.
Main Results:
- The yeast TACO1 orthologue, Dpc29, functions as a general mitochondrial translation factor.
- Dpc29 is necessary for optimal expression of OXPHOS genes.
- Mutations in MRP7 globally reduce mitochondrial translation in dpc29Δ cells.
- Mitoribosome profiling indicates Dpc29's role in post-initiation translation.
- Human TACO1 rescues dpc29Δ yeast defects, indicating conserved function.
Conclusions:
- The yeast protein Dpc29 is a general mitochondrial translation factor, not a COX1-specific activator.
- Dpc29 plays a crucial role in mitochondrial translation and OXPHOS gene expression.
- Human TACO1 and yeast Dpc29 perform conserved functions in mitochondrial translation.
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