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Updated: Aug 14, 2025

Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution
Published on: February 24, 2015
DNA Methylation: From Cancer Biology to Clinical Perspectives
Chen Chen1, Zehua Wang1, Yi Ding1
1Department of Oncology, The First Affiliated Hospital of Zhengzhou University, 450052 Zhengzhou, Henan, China.
Abstract:
DNA methylation plays an important role in the silence of tissue-specific genes to prevent them from being expressed in the wrong tissue. Aberrant DNA methylation (genome-wide hypomethylation and site-specific hypermethylation) are observed in many types of cancer. DNA methylation patterns are established and maintained through the combined actions of methyltransferase and demethylase, such as DNA methyltransferase (DNMT)-1, DNMT-3, and ten-eleven translocation (TET) family enzymes. It is well known that the process of tumor evolution is complicated with different hallmarks. Early findings put forward the model that focal hypermethylation of tumor suppressor genes (TSG) could straightly trigger transcriptional silencing and malignant transformation, whereas varying levels of DNA methylation also occur at other sites and can differently regulate gene expression and biological processes. The interplay of tumor and immune cells in the tumor microenvironment is complex. Understanding the role of DNA methylation in cancer immunity is critical to better navigate epigenetic agents. Furthermore, a greater understanding of the interaction of DNA methylation with tumor metabolic reprogramming would create a bright avenue for pharmacologic managements of malignancies. In this review, we will describe the molecular mechanisms of DNA methylation abnormalities in cancer biology, introduce the roles of DNA methylation patterns on cancer-immunity cycle and metabolic reprogramming, summarize modulators that are used in targeting DNA remodeling, and highlight the importance of combining epigenome-targeting drugs with other cancer therapies.
Insights
DNA methylation abnormalities, including hypomethylation and hypermethylation, are hallmarks of cancer. Understanding these epigenetic changes is crucial for developing new cancer therapies targeting immunity and metabolism.
Area of Science:
- Molecular Biology
- Epigenetics
- Cancer Biology
Background:
- DNA methylation regulates gene expression, preventing tissue-specific genes from activating inappropriately.
- Aberrant DNA methylation patterns, such as genome-wide hypomethylation and site-specific hypermethylation, are characteristic of various cancers.
- DNA methylation is dynamically regulated by DNA methyltransferases (DNMTs) and demethylases (TET enzymes).
Purpose of the Study:
- To elucidate the molecular mechanisms of DNA methylation abnormalities in cancer.
- To explore the influence of DNA methylation on the cancer-immunity cycle and metabolic reprogramming.
- To review modulators targeting DNA remodeling and combination therapies.
Main Methods:
- Literature review of molecular mechanisms.
- Analysis of DNA methylation's role in cancer immunity and metabolism.
- Summary of epigenetic modulators and combination strategies.
Main Results:
- Focal hypermethylation of tumor suppressor genes can initiate malignant transformation.
- Altered DNA methylation influences gene expression and biological processes during tumor evolution.
- DNA methylation patterns impact the tumor microenvironment and host immune response.
Conclusions:
- Understanding DNA methylation's role in cancer immunity and metabolic reprogramming is vital for novel therapeutic strategies.
- Epigenetic agents targeting DNA remodeling hold promise for cancer treatment.
- Combining epigenome-targeting drugs with other cancer therapies may enhance treatment efficacy.
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