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Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
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Information extraction pipelines for knowledge graphs.

Mohamad Yaser Jaradeh1, Kuldeep Singh2, Markus Stocker3

  • 1L3S Research Center, Leibniz University Hannover, Hanover, Germany.

Knowledge and Information Systems
|January 16, 2023
PubMed
Summary
This summary is machine-generated.

Plumber unifies diverse knowledge graph (KG) completion methods into a flexible framework. This approach dynamically generates optimal KG completion pipelines, outperforming existing methods across various knowledge graphs.

Keywords:
Information extractionNLP pipelinesSemantic searchSemantic webSoftware reusability

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Area of Science:

  • Artificial Intelligence
  • Data Science
  • Natural Language Processing

Background:

  • Numerous knowledge graph (KG) completion methods exist but operate in isolation.
  • The collective performance and limitations of these disjointed approaches are not well understood.
  • Existing KG completion research lacks a unified framework to integrate and compare diverse methodologies.

Purpose of the Study:

  • To extend the Plumber framework by integrating 40 reusable components for KG completion subtasks.
  • To enable dynamic generation of 432 distinct knowledge extraction pipelines.
  • To optimize pipeline selection based on input sentences using a transformer-based model.

Main Methods:

  • Extended the Plumber framework with 40 components for KG completion subtasks (e.g., coreference resolution, entity linking, relation extraction).
  • Developed a system to dynamically generate 432 distinct knowledge extraction pipelines.
  • Trained a transformer-based classification model to select optimal pipelines based on input sentence embeddings.
  • Evaluated Plumber on standard datasets across DBpedia, Wikidata, and Open Research Knowledge Graph.

Main Results:

  • Plumber effectively generates KG completion pipelines tailored to input sentences.
  • The framework demonstrated superior performance compared to all baseline methods, irrespective of the KG used.
  • Analysis revealed insights into component synergies, failure cases, and limitations.

Conclusions:

  • Plumber provides a unified and effective approach to knowledge graph completion.
  • Dynamic pipeline generation optimizes KG completion performance across diverse datasets and KGs.
  • The framework facilitates a deeper understanding of the strengths and weaknesses of various KG completion techniques.