Related Experiment Video
Updated: Aug 14, 2025

Lensless Fluorescent Microscopy on a Chip
Published on: August 17, 2011
Lossless Compressed Sensing of Photon Counts for Fast Diffuse Correlation Spectroscopy
Arindam Biswas1, Ashwin B Parthasarathy1
1Department of Electrical Engineering, University of South Florida, Tampa, FL 33620, USA.
Abstract:
Diffuse Correlation Spectroscopy (DCS), a noninvasive optical technique, measures deep tissue blood flow using avalanche photon counting modules and data acquisition devices such as FPGAs or correlator boards. Conventional DCS instruments use in-processor counter modules that consume 32 bits/channel which is inefficient for low-photon budget situations prevalent in diffuse optics. Scaling these photon counters for large-scale imaging applications is difficult due to bandwidth and processing time considerations. Here, we introduce a new, lossless compressed sensing approach for fast and efficient detection of photon counts. The compressed DCS method uses an array of binary-coded-decimal counters to record photon counts from 8 channels simultaneously as a single 32-bit number. We validate the compressed DCS approach by comparisons with conventional DCS in experiments on tissue simulating phantoms and in-vivo arm cuff occlusion. Lossless compressed DCS was implemented with 87.5% compression efficiency. In tissue simulating phantoms, it was able to accurately estimate a tissue blood flow index, with no statistically significant difference compared to conventional DCS. Compressed DCS also recorded blood flow in vivo, in human forearm, with signal-to-noise ratio and dynamic range comparable to conventional DCS. Lossless 87.5% efficient compressed sensing counting of photon counts meets and exceeds benchmarks set by conventional DCS systems, offering a low-cost alternative for fast (~100 Hz) deep tissue blood flow measurement with optics.
Related Concept Videos
Super-resolution Fluorescence Microscopy
Confocal Fluorescence Microscopy
2D NMR: Heteronuclear Single-Quantum Correlation Spectroscopy (HSQC)
Electron Microscope Tomography and Single-particle Reconstruction
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Atomic Fluorescence Spectroscopy
2D NMR: Homonuclear Correlation Spectroscopy (COSY)

