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Updated: Aug 14, 2025

Population and Single-Cell Analysis of Antibiotic Persistence in Escherichia coli
Published on: March 24, 2023
Systematic design of pulse dosing to eradicate persister bacteria
Garima Singh1, Mehmet A Orman1, Jacinta C Conrad1
1Chemical and Biomolecular Engineering Department, University of Houston, Houston, Texas, United States of America.
Abstract:
A small fraction of infectious bacteria use persistence as a strategy to survive exposure to antibiotics. Periodic pulse dosing of antibiotics has long been considered a potentially effective strategy towards eradication of persisters. Recent studies have demonstrated through in vitro experiments that it is indeed feasible to achieve such effectiveness. However, systematic design of periodic pulse dosing regimens to treat persisters is currently lacking. Here we rigorously develop a methodology for the systematic design of optimal periodic pulse dosing strategies for rapid eradication of persisters. A key outcome of the theoretical analysis, on which the proposed methodology is based, is that bactericidal effectiveness of periodic pulse dosing depends mainly on the ratio of durations of the corresponding on and off parts of the pulse. Simple formulas for critical and optimal values of this ratio are derived. The proposed methodology is supported by computer simulations and in vitro experiments.
Insights
Periodic pulse antibiotic dosing can effectively eradicate persistent bacteria. This study develops a systematic methodology, revealing that the ratio of antibiotic on/off durations is key to optimal treatment strategies for bacterial persisters.
Area of Science:
- Microbiology
- Pharmacology
- Mathematical Biology
Background:
- A small fraction of bacteria exhibit persistence, surviving antibiotic exposure.
- Periodic pulse antibiotic dosing is a proposed strategy to combat these persisters.
- Current methods lack systematic design for optimizing pulse dosing regimens.
Purpose of the Study:
- To develop a rigorous methodology for designing optimal periodic pulse dosing strategies.
- To identify key parameters influencing the effectiveness of pulse dosing against bacterial persisters.
Main Methods:
- Theoretical analysis of periodic pulse dosing dynamics.
- Derivation of formulas for critical and optimal pulse duration ratios.
- Validation through computer simulations and in vitro experiments.
Main Results:
- Bactericidal effectiveness is primarily determined by the ratio of antibiotic on-time to off-time.
- Simple formulas for critical and optimal ratios were derived.
- The proposed methodology demonstrated feasibility in simulations and experiments.
Conclusions:
- A systematic approach to designing effective periodic pulse antibiotic dosing is established.
- The on/off duration ratio is a critical factor for eradicating bacterial persisters.
- This methodology offers a framework for optimizing antibiotic treatment strategies.
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