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Graph Convolutional Neural Networks for Histologic Classification of Pancreatic Cancer
Weiyi Wu1, Xiaoying Liu2, Robert B Hamilton2
1From the Department of Biomedical Data Science (Wu, Hassanpour), Geisel School of Medicine, Hanover, New Hampshire.
Context.—:
Pancreatic ductal adenocarcinoma has some of the worst prognostic outcomes among various cancer types. Detection of histologic patterns of pancreatic tumors is essential to predict prognosis and decide the treatment for patients. This histologic classification can have a large degree of variability even among expert pathologists.
Objective.—:
To detect aggressive adenocarcinoma and less aggressive pancreatic tumors from nonneoplasm cases using a graph convolutional network-based deep learning model.
Design.—:
Our model uses a convolutional neural network to extract detailed information from every small region in a whole slide image. Then, we use a graph architecture to aggregate the extracted features from these regions and their positional information to capture the whole slide-level structure and make the final prediction.
Results.—:
We evaluated our model on an independent test set and achieved an F1 score of 0.85 for detecting neoplastic cells and ductal adenocarcinoma, significantly outperforming other baseline methods.
Conclusions.—:
If validated in prospective studies, this approach has a great potential to assist pathologists in identifying adenocarcinoma and other types of pancreatic tumors in clinical settings.
