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Updated: Aug 13, 2025

Population and Single-Cell Analysis of Antibiotic Persistence in Escherichia coli
Published on: March 24, 2023
Antibiotic profiling of multidrug resistant pathogens in one-day-old chicks imported from Belgium to benin
Philibert Dougnon1, Victorien Dougnon2, Boris Legba1
1Research Unit in Applied Microbiology and Pharmacology of Natural Substances, Research Laboratory in Applied Biology, Polytechnic School of Abomey-Calavi, University of Abomey-Calavi, Abomey-Calavi, Benin.
Insights
Imported day-old chicks can carry resistant bacteria like E. coli, posing a risk to poultry production in Benin. Immediate detection systems are needed to prevent the spread of antimicrobial resistance.
Area of Science:
- Veterinary Microbiology
- Antimicrobial Resistance
- Food Safety
Background:
- Limited data exists on resistant pathogens in imported day-old chicks in Benin.
- Assessed pathogenic bacteria and antimicrobial resistance in 180 chicks imported from Belgium.
Purpose of the Study:
- To determine the occurrence of pathogenic bacteria and their antimicrobial resistance profiles in imported day-old chicks.
- To identify potential sources of antimicrobial resistance dissemination in poultry production.
Main Methods:
- Bacterial isolation using classic bacteriological methods.
- Antibiotic susceptibility testing via Kirby-Bauer disc diffusion (EUCAST guidelines).
- Real-time PCR for screening resistance genes (SulI, SulII, blaTEM).
Main Results:
- Isolated bacteria included Escherichia coli (50%), Enterococcus spp. (28%), and coagulase-negative staphylococci (10%).
- E. coli showed high resistance to ciprofloxacin (81%) and trimethoprim+sulfamethoxazole (62%).
- SulII gene detected in all samples; SulI and blaTEM genes found at 44.44% and 16.67% respectively.
Conclusions:
- Imported day-old chicks can be a source for disseminating resistant bacteria in poultry production.
- A need for rapid detection systems for resistant bacteria in imported chicks is highlighted.
Background:
Little data exist on the presence of resistant pathogens in day-old chicks imported into Benin. The occurrence of pathogenic bacteria was assessed in 180 one-day-old chicks imported from Belgium and received at the Cardinal Bernardin Gantin International Airport in Cotonou (Benin). The samples included swabbing the blisters of 180 chicks, followed by 18 pools of 10 swabs for bacterial isolation. Classic bacteriological methods based on Gram staining, culture on specific media and biochemical characterization were used. Antibacterial susceptibility screening to antibiotics was conducted using the Kirby-Bauer disc diffusion method, and the results were interpreted according to guidelines from the European Committee on Antimicrobial Susceptibility Testing (EUCAST). DNA extraction was performed by the heat treatment method. Resistance genes were screened by real-time PCR.
Results:
We isolated 32 bacteria, including Escherichia coli (50%), Enterococcus spp. (28%), and coagulase-negative staphylococci (10%). The isolates were investigated for antibiotic resistance against antibiotics using the disk diffusion method and showed that in the Escherichia coli strains isolated, the highest rate of resistance was obtained against ciprofloxacin (81%), followed by trimethoprim + sulfamethoxazole (62%). Enterobacter cloacae was sensitive to all the antibiotics tested. Pseudomonas spp. resistant to amoxicillin and trimethoprim + sulfamethoxazole was noted. The SulII gene was found in all cloacal samples, while the SulI and blaTEM genes were present at 44.44% and 16.67%, respectively.
Conclusion:
This study confirms that imported day-old chicks can be a potential source of dissemination of resistant bacteria in poultry production. A system for immediate detection of resistant bacteria in chicks upon arrival in the country is thus needed.
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