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Related Concept Videos

MicroRNAs01:22

MicroRNAs

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MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
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siRNA - Small Interfering RNAs02:30

siRNA - Small Interfering RNAs

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Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
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Experimental RNAi02:15

Experimental RNAi

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RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
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RNA Interference01:23

RNA Interference

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RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
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Targeted Cancer Therapies02:57

Targeted Cancer Therapies

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The targeted cancer therapies, also known as “molecular targeted therapies,” take advantage of the molecular and genetic differences between the cancer cells and the normal cells. It needs a thorough understanding of the cancer cells to develop drugs that can target specific molecular aspects that drive the growth, progression, and spread of cancer cells without affecting the growth and survival of other normal cells in the body.
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Inhibition of Cdk Activity02:34

Inhibition of Cdk Activity

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The orderly progression of the cell cycle depends on the activation of Cdk protein by binding to its cyclin partner. However, the cell cycle must be restricted when undergoing abnormal changes. Most cancers correlate to the deregulated cell cycle, and since Cdks are a central component of the cell cycle, Cdk inhibitors are extensively studied to develop anticancer agents. For instance, cyclin D associates with several Cdks, such as Cdk 4/6, to form an active complex. The cyclin D-Cdk4/6 complex...
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Updated: Aug 12, 2025

Genome-wide Screen for miRNA Targets Using the MISSION Target ID Library
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Drug-Like Small Molecules That Inhibit Expression of the Oncogenic MicroRNA-21.

Matthew D Shortridge1, Bhawna Chaubey1, Huanyu J Zhang2

  • 1Department of Chemistry, University of Washington, Seattle, Washington 98195, United States.

ACS Chemical Biology
|February 2, 2023
PubMed
Summary
This summary is machine-generated.

Researchers discovered small molecules that inhibit microRNA-21 (miR-21) maturation by targeting its precursor. These compounds show potential for treating diseases linked to abnormal miR-21 expression.

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • Drug Discovery

Background:

  • MicroRNA-21 (miR-21) is implicated in oncogenesis and inflammation.
  • Dysregulation of miR-21 contributes to various pathologies.
  • Targeting miRNA biogenesis offers a therapeutic strategy.

Purpose of the Study:

  • To discover small molecules that specifically inhibit miR-21 precursor processing.
  • To investigate the mechanism of action for these novel inhibitors.
  • To evaluate the therapeutic potential of these molecules in cancer models.

Main Methods:

  • High-throughput screening for small molecule binders to miR-21 precursor.
  • Biochemical assays to determine binding affinity and mechanism of inhibition.
  • Cell-based assays to assess effects on miR-21 levels and cellular proliferation.
  • Structure-activity relationship studies.

Main Results:

  • Identified drug-like small molecules with mid-nanomolar affinity for miR-21 precursor.
  • Molecules induce structural changes at the Dicer cleavage site, inhibiting miRNA processing.
  • Potent compounds reduce cancer cell proliferation and miR-21 levels without off-target effects.
  • Specificity confirmed by nucleotide substitutions and testing on other miRNA precursors.

Conclusions:

  • Novel small molecules effectively suppress miR-21 maturation.
  • These compounds represent a promising therapeutic avenue for miR-21-driven diseases.
  • Ligand-efficient molecules demonstrate specific biochemical and cellular activity.