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Updated: Aug 11, 2025

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
Published on: July 25, 2013
Chemical language models for de novo drug design: Challenges and opportunities
1Eindhoven University of Technology, Institute for Complex Molecular Systems and Dept. Biomedical Engineering, Eindhoven, Netherlands; Centre for Living Technologies, Alliance TU/e, WUR, UU, UMC Utrecht, Netherlands.
Abstract:
Generative deep learning is accelerating de novo drug design, by allowing the generation of molecules with desired properties on demand. Chemical language models - which generate new molecules in the form of strings using deep learning - have been particularly successful in this endeavour. Thanks to advances in natural language processing methods and interdisciplinary collaborations, chemical language models are expected to become increasingly relevant in drug discovery. This minireview provides an overview of the current state-of-the-art of chemical language models for de novo design, and analyses current limitations, challenges, and advantages. Finally, a perspective on future opportunities is provided.
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