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Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
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Target identification by structure-based computational approaches: Recent advances and perspectives.
Simona De Vita1, Maria Giovanna Chini2, Giuseppe Bifulco1
1Department of Pharmacy, University of Salerno, Via Giovanni Paolo II 132, 84084 Fisciano (SA), Italy.
Bioorganic & Medicinal Chemistry Letters
|February 5, 2023
Summary
Computational methods accelerate drug discovery by aiding target identification. Inverse Virtual Screening (IVS) offers a powerful in silico approach to predict drug targets, complementing experimental methods.
Area of Science:
- Computational chemistry and drug discovery
- Bioinformatics and cheminformatics
Background:
- Traditional experimental methods for identifying drug targets can be time-consuming and resource-intensive.
- Computational techniques are increasingly vital in early-stage drug discovery for efficient target identification.
- In silico screening offers a promising alternative or complement to wet-lab approaches.
Purpose of the Study:
- To provide an overview of computational target identification techniques.
- To highlight recent advancements in structure-based computational approaches for target identification.
- To focus on Inverse Virtual Screening (IVS) and its applications in drug discovery.
Main Methods:
- Review of established target identification techniques.
- Detailed examination of structure-based computational methods.
- Analysis of Inverse Virtual Screening (IVS) methodologies and case studies.
- Exploration of computational approaches integrated with other techniques.
Main Results:
- Computational techniques, particularly in silico screening, are gaining prominence in drug discovery's target identification phase.
- Structure-based computational approaches, including IVS, show significant potential for identifying biological targets.
- IVS has demonstrated utility in recent drug discovery applications.
Conclusions:
- Computational methods, especially IVS, are crucial for accelerating early-stage drug discovery.
- Structure-based computational approaches offer efficient strategies for target identification.
- Future research should explore the synergistic use of IVS with other computational and experimental methods.
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