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Related Experiment Video

Updated: Aug 11, 2025

Spatial Profiling of Protein and RNA Expression in Tissue: An Approach to Fine-Tune Virtual Microdissection
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Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments.

Chaichontat Sriworarat1, Annie Nguyen2, Nicholas J Eagles2

  • 1Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, MD, USA.

Biorxiv : the Preprint Server for Biology
|February 7, 2023
PubMed
Summary
This summary is machine-generated.

Samui is a new web-based tool for visualizing large biological images quickly. It allows researchers to easily share, explore, and annotate complex imaging data, improving accessibility and analysis.

Keywords:
georeferencinginteractive image viewermulti-dimensional imagesingle-cell transcriptomicsspatially-resolved transcriptomicsweb-based browser

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Area of Science:

  • Biological imaging
  • Computational biology
  • Data visualization

Background:

  • High-resolution and multiplexed imaging generate large, complex multidimensional datasets.
  • Sharing, exploring, and customizing visualizations of these large biological images present significant challenges.

Conclusions:

  • Samui addresses the challenge of visualizing and sharing large multidimensional biological images.
  • The tool enhances accessibility and interactivity for researchers working with complex imaging data.
  • Samui is available with example datasets for broad utility.