Related Experiment Video
Updated: Aug 11, 2025

Correlative Light Electron Microscopy CLEM for Tracking and Imaging Viral Protein Associated Structures in Cryo-immobilized Cells
Published on: September 7, 2018
Identifying Active Progeny Virus Particles in Formalin-Fixed, Paraffin-Embedded Sections Using Correlative Light and
Toshiya Itoh1, Satoshi Yamada2, Isao Ohta3
1Department of Obstetrics and Gynecology, Hamamatsu University School of Medicine, Hamamatsu, Japan; Institute for NanoSuit Research, Preeminent Medical Photonics Education & Research Center, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Abstract:
Immunohistochemical analysis of formalin-fixed paraffin-embedded (FFPE) tissue blocks is routinely used to identify virus-infected cells. However, detecting virus particles in FFPE sections using light microscopy is difficult because of the light diffraction resolution limitations of an optical microscope. In this study, light microscopy and field emission scanning electron microscopy were performed to observe 3-dimensional virus particles in FFPE sections in a nondestructive manner using NanoSuit or osmium conductive treatment methods. The virus particles in FFPE sections were immunostained with specific antibodies against the surface antigens of the viral particles and stained with 3,3'-diaminobenzidine. A metal solution (0.2% gold chloride or 2% osmium tetroxide) was applied to enhance the 3,3'-diaminobenzidine-stained area. This procedure is nondestructive for FFPE sections and is a simpler method than transmission electron microscopy. To validate the applicability of this technique, we performed 3-dimensional imaging of the virus particles of different sizes, such as human papillomavirus, cytomegalovirus, and varicella-zoster virus. Furthermore, ultrathin sections from the FFPE sections that were observed to harbor viral particles using field emission scanning electron microscopy were prepared and assessed using transmission electron microscopy. In the correlative areas, transmission electron microscopy confirmed the presence of large numbers of virus particles. These results indicated that the combination of marking viral particles with 3,3'-diaminobenzidine/metal staining and conductive treatment can identify active progeny virus particles in FFPE sections using scanning electron microscopy. This easy correlative imaging of field emission scanning electron microscopy of the identical area of FFPE in light microscopy may help elucidate new pathological mechanisms of virus-related diseases.
Insights
This study introduces a new method to visualize virus particles in FFPE tissue using field emission scanning electron microscopy. This technique enhances 3D imaging of viral particles, aiding in understanding virus-related diseases.
Area of Science:
- Pathology
- Microscopy
- Virology
Background:
- Immunohistochemistry on FFPE tissues is standard for identifying virus-infected cells.
- Light microscopy has limitations in resolving virus particles due to diffraction limits.
- Detecting virus particles in FFPE sections requires advanced imaging techniques.
Purpose of the Study:
- To develop a nondestructive method for observing 3D virus particles in FFPE sections.
- To overcome the resolution limitations of light microscopy for viral particle detection.
- To enable correlative light and electron microscopy for studying virus-related diseases.
Main Methods:
- Field emission scanning electron microscopy (FESEM) combined with light microscopy.
- Nondestructive 3D imaging of virus particles in FFPE sections.
- Immunostaining with specific antibodies and 3,3'-diaminobenzidine (DAB) staining, enhanced with metal solutions (gold chloride or osmium tetroxide).
Main Results:
- Successful 3D visualization of various virus particles (HPV, CMV, VZV) in FFPE sections.
- Demonstrated nondestructive imaging of FFPE sections using FESEM.
- Correlative transmission electron microscopy confirmed the presence of virus particles in FESEM-identified areas.
Conclusions:
- The combined DAB/metal staining and conductive treatment allows FESEM identification of active virus particles in FFPE sections.
- This method offers a simpler alternative to transmission electron microscopy for FFPE samples.
- Easy correlative imaging can advance the understanding of virus-related pathological mechanisms.
Related Concept Videos
Immunogold Electron Microscopy
Immunofluorescence Microscopy
Overview of Microscopy Techniques

