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Discovery of N-sulfonylated aminosalicylic acids as dual MCL-1/BCL-xL inhibitors
Lijia Chen1, Jay Chauhan1, Jeremy L Yap1
1Department of Pharmaceutical Sciences, University of Maryland School of Pharmacy 20 N. Pine St. Baltimore MD 21201 USA steven.fletcher@rx.umaryland.edu.
Abstract:
The anti-apoptotic protein MCL-1, which is overexpressed in multiple cancers, is presently a focus for the development of targeted drugs in oncology. We previously discovered inhibitors of MCL-1 based on 1-sulfonylated 1,2,3,4-tetrahydroquinoline-6-carboxylic acids ("1,6-THQs"). However, with the nitrogen atom constrained in the bicyclic ring, we were unable to modify the alkyl portion of the tertiary sulfonamide functionality. Moreover, the introduction of additional functional groups onto the benzene ring portion of the THQ bicycle would not be trivial. Therefore, we elected to deconstruct the piperidine-type ring of the 6-carboxy-THQ lead to create a new 4-aminobenzoic acid scaffold. Given its simplicity, this permitted us to introduce diversity at the sulfonamide nitrogen, as well as vary the positions and substituents of the benzene ring. One of our most potent MCL-1 inhibitors, 6e-OH, exhibited a K i of 0.778 μM. Heteronuclear single quantum coherence experiments suggested 6e-OH bound in the canonical BH3-binding groove, with significant perturbations of R263, which forms a salt bridge with MCL-1's pro-apoptotic binding partners, as well as residues in the p2 pocket. Selectivity studies indicated that our compounds are dual inhibitors of MCL-1 and BCL-xL, with 17cd the most potent dual inhibitor: K i = 0.629 μM (MCL-1), 1.67 μM (BCL-xL). Whilst selective inhibitors may be more desirable in certain instances, polypharmacological agents whose additional target(s) address other pathways associated with the disease state, or serve to counter resistance mechanisms to the primary target, may prove particularly effective therapeutics. Since selective MCL-1 inhibition may be thwarted by overexpression of sister anti-apoptotic proteins, including BCL-xL and BCL-2, we believe our work lays a solid foundation towards the development of multi-targeting anti-cancer drugs.
Insights
Researchers developed novel 4-aminobenzoic acid scaffolds as potent inhibitors of the anti-apoptotic protein MCL-1. These compounds also show dual inhibition of BCL-xL, offering a foundation for multi-targeting anti-cancer drugs.
Area of Science:
- Medicinal Chemistry
- Cancer Biology
- Drug Discovery
Background:
- MCL-1 is an anti-apoptotic protein overexpressed in many cancers, making it a key target for oncology drug development.
- Previous MCL-1 inhibitors based on 1,2,3,4-tetrahydroquinoline-6-carboxylic acids had limitations in structural modification.
- A new scaffold was needed to allow for greater diversity in inhibitor design.
Purpose of the Study:
- To design and synthesize novel inhibitors targeting the anti-apoptotic protein MCL-1.
- To explore a new 4-aminobenzoic acid scaffold for improved inhibitor development.
- To investigate dual inhibition of MCL-1 and BCL-xL for potential polypharmacology.
Main Methods:
- Deconstruction of the previous lead scaffold to create a 4-aminobenzoic acid core.
- Synthesis of diverse analogs with modifications at the sulfonamide nitrogen and benzene ring.
- Biochemical assays to determine inhibitor potency (Ki) against MCL-1 and BCL-xL.
- Heteronuclear single quantum coherence (HSQC) experiments to elucidate binding modes.
Main Results:
- A novel 4-aminobenzoic acid scaffold was successfully developed, enabling significant structural diversification.
- Compound 6e-OH demonstrated potent MCL-1 inhibition with a Ki of 0.778 μM and bound to the canonical BH3-binding groove.
- Compound 17cd emerged as a potent dual inhibitor of MCL-1 (Ki = 0.629 μM) and BCL-xL (Ki = 1.67 μM).
Conclusions:
- The new 4-aminobenzoic acid scaffold provides a versatile platform for developing potent MCL-1 inhibitors.
- Dual inhibition of MCL-1 and BCL-xL is achievable with this scaffold, potentially overcoming resistance mechanisms.
- These findings lay the groundwork for developing effective multi-targeting anti-cancer therapeutics.
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