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A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Synthetic lethal interactions of DEAD/H-box helicases as targets for cancer therapy
Ananna Bhadra Arna1, Hardikkumar Patel2, Ravi Shankar Singh1
1Department of Biochemistry, Microbiology and Immunology, University of Saskatchewan, Saskatoon, SK, Canada.
Abstract:
DEAD/H-box helicases are implicated in virtually every aspect of RNA metabolism, including transcription, pre-mRNA splicing, ribosomes biogenesis, nuclear export, translation initiation, RNA degradation, and mRNA editing. Most of these helicases are upregulated in various cancers and mutations in some of them are associated with several malignancies. Lately, synthetic lethality (SL) and synthetic dosage lethality (SDL) approaches, where genetic interactions of cancer-related genes are exploited as therapeutic targets, are emerging as a leading area of cancer research. Several DEAD/H-box helicases, including DDX3, DDX9 (Dbp9), DDX10 (Dbp4), DDX11 (ChlR1), and DDX41 (Sacy-1), have been subjected to SL analyses in humans and different model organisms. It remains to be explored whether SDL can be utilized to identity druggable targets in DEAD/H-box helicase overexpressing cancers. In this review, we analyze gene expression data of a subset of DEAD/H-box helicases in multiple cancer types and discuss how their SL/SDL interactions can be used for therapeutic purposes. We also summarize the latest developments in clinical applications, apart from discussing some of the challenges in drug discovery in the context of targeting DEAD/H-box helicases.
Insights
DEAD/H-box helicases are crucial for RNA metabolism and often upregulated in cancer. This review explores their synthetic lethality (SL) and synthetic dosage lethality (SDL) interactions for novel cancer therapeutic strategies.
Area of Science:
- Molecular Biology
- Cancer Research
- Genetics
Background:
- DEAD/H-box helicases play vital roles in RNA metabolism processes.
- These helicases are frequently upregulated in various cancers, suggesting their oncogenic potential.
- Mutations in some DEAD/H-box helicases are linked to cancer development.
Purpose of the Study:
- To analyze gene expression data of DEAD/H-box helicases in multiple cancer types.
- To explore the therapeutic potential of synthetic lethality (SL) and synthetic dosage lethality (SDL) strategies targeting these helicases.
- To summarize current clinical applications and challenges in developing drugs against DEAD/H-box helicases.
Main Methods:
- Analysis of gene expression data for a subset of DEAD/H-box helicases across various cancers.
- Review of existing literature on SL and SDL approaches involving DEAD/H-box helicases.
- Examination of clinical trial data and drug discovery efforts.
Main Results:
- DEAD/H-box helicases exhibit altered expression patterns in numerous cancer types.
- SL and SDL interactions offer promising avenues for targeted cancer therapy.
- Several DEAD/H-box helicases have been investigated for their therapeutic utility in cancer.
Conclusions:
- Targeting DEAD/H-box helicases through SL/SDL approaches holds significant therapeutic promise for cancer treatment.
- Further research is needed to fully elucidate SDL strategies for druggable targets in cancers overexpressing these helicases.
- Overcoming drug discovery challenges is crucial for realizing the clinical potential of these targets.
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