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Updated: Aug 10, 2025

Author Spotlight: Advancing 3D Cytoarchitecture Analysis - Rapid Volumetric Reconstruction of the Human Brain
Published on: January 26, 2024
Efficient 3D light-sheet imaging of very large-scale optically cleared human brain and prostate tissue samples
Anna Schueth1, Sven Hildebrand2, Iryna Samarska3
1Department of Cognitive Neuroscience, Faculty of Psychology & Neuroscience, Maastricht University (UM), Maastricht, the Netherlands. anna.schueth@maastrichtuniversity.nl.
We developed a novel light-sheet microscopy technique for fast 3D imaging of large human tissue samples. This cleared-tissue dual view Selective Plane Illumination Microscope (ct-dSPIM) enables high-resolution visualization for both fundamental research and clinical applications.
Area of Science:
- Biomedical Imaging
- Microscopy Techniques
- Histopathology
Background:
- 3D imaging of human tissues at cellular resolution and large fields of view (FOV) is crucial for research and clinical diagnostics.
- Existing methods often face limitations in scale, resolution, or speed when imaging large tissue volumes.
Purpose of the Study:
- To demonstrate the feasibility of light-sheet microscopy for imaging large-scale (cm³), cleared human tissue samples.
- To present a novel prototype, the cleared-tissue dual view Selective Plane Illumination Microscope (ct-dSPIM), for high-resolution 3D tissue imaging.
- To evaluate the imaging quality and potential clinical applications of the ct-dSPIM system.
Main Methods:
- Development of a cleared-tissue dual view Selective Plane Illumination Microscope (ct-dSPIM) prototype.
- Application of the FFPE-MASH protocol for tissue clearing.
- Utilized mosaic scanning techniques at varying resolutions (Mosaic 16, 4, and 0.5) for imaging formalin-fixed human brain and prostate cancer samples.
Main Results:
- Successfully imaged ~5 cm³ human brain and ~7 cm³ FFPE prostate cancer samples with cellular resolution.
- Demonstrated fast 3D acquisition speeds, ranging from ~1.7 h/cm³ (16.4 µm resolution) to ~15.8 h/cm³ (0.5 µm resolution).
- Visualized cortical layers and neurons in human brain tissue and confirmed suitability for Gleason score grading in prostate cancer samples.
Conclusions:
- ct-dSPIM is a powerful technique for quantitative 3D assessment of large-scale MASH-prepared human tissue samples.
- The system offers high-resolution imaging capabilities suitable for both fundamental biological investigations and clinical diagnostics.
- This technology holds considerable future potential for advancing histopathology and personalized medicine.
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