Emerging roles of tRNA-derived fragments in cancer

Min Fu1,2, Jianmei Gu3, Maoye Wang2

  • 1Institute of Digestive Diseases, The Affiliated People's Hospital of Jiangsu University, Zhenjiang, 212002, Jiangsu, China.

Molecular Cancer
|February 14, 2023
PubMed

Insights

tRNA-derived fragments (tRFs) are small RNAs regulating cell functions and human diseases like cancer. Extracellular tRFs show promise as cancer biomarkers for liquid biopsy, highlighting their diagnostic and prognostic potential.

Area of Science:

  • Molecular Biology
  • Genomics
  • Cancer Research

Background:

  • tRNA-derived fragments (tRFs) are small non-coding RNAs originating from tRNA precursors.
  • Advances in high-throughput sequencing have revealed diverse tRF functions in physiological and pathological processes.
  • tRFs are implicated as critical regulators in human diseases, particularly cancer.

Purpose of the Study:

  • To review the biogenesis, classification, and modification of tRFs.
  • To summarize the multifaceted functions of tRFs in biological systems.
  • To highlight the current research status and future perspectives of tRFs in cancer, including their role in liquid biopsy.

Main Methods:

  • Literature review of studies on tRNA-derived fragments.
  • Analysis of high-throughput sequencing data related to tRFs.
  • Synthesis of current research on tRF functions and roles in cancer.

Main Results:

  • tRFs regulate cell viability, differentiation, and homeostasis through various mechanisms.
  • Extracellular tRFs are emerging as potential diagnostic and prognostic biomarkers for cancer.
  • tRFs play multifaceted roles in the development and progression of cancer.

Conclusions:

  • tRFs are key regulators in human diseases, especially cancer.
  • Extracellular tRFs hold significant promise for cancer liquid biopsy applications.
  • Further research into tRFs offers new avenues for cancer diagnosis and treatment.

Related Concept Videos

Transfer RNA Synthesis02:36

Transfer RNA Synthesis

One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
12.1K
RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.6K
lncRNA - Long Non-coding RNAs02:39

lncRNA - Long Non-coding RNAs

In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
8.7K
Leaky Scanning02:28

Leaky Scanning

During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.2K
RNA Structure01:19

RNA Structure

The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
5.0K
Translation01:31

Translation

Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
Proteins are...
15.1K