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Updated: Aug 9, 2025

An Assay for Quantifying Protein-RNA Binding in Bacteria
Published on: June 12, 2019
Early antitermination in the atypical coliphage mEp021 mediated by the Gp17 protein
Guadalupe Valencia-Toxqui1, Elissa P Ballinas-Turrén1, Rosa Ma Bermúdez-Cruz1
1Departamento de Genética y Biología Molecular, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Mexico City, Mexico.
Abstract:
The coliphage mEp021 belongs to a phage group with a unique immunity repressor, and its life cycle requires the host factor Nus. mEp021 has been classified as non-lambdoid based on its specific characteristics. The mEp021 genome carries a gene encoding an Nλ-like antiterminator protein, termed Gp17, and three nut sites (nutL, nutR1, and nutR2). Analysis of plasmid constructs containing these nut sites, a transcription terminator, and a GFP reporter gene showed high levels of fluorescence when Gp17 was expressed, but not in its absence. Like lambdoid N proteins, Gp17 has an arginine-rich motif (ARM), and mutations in its arginine codons inhibit its function. In infection assays using the mutant phage mEp021ΔGp17::Kan (where gp17 has been deleted), gene transcripts located downstream of transcription terminators were obtained only when Gp17 was expressed. In contrast to phage lambda, mEp021 virus particle production was partially restored (>1/3 relative to wild type) when nus mutants (nusA1, nusB5, nusC60, and nusE71) were infected with mEp021 and Gp17 was overexpressed. Our results suggest that RNA polymerase reads through the third nut site (nutR2), which is more than 7.9 kbp downstream of nutR1.
Insights
The coliphage mEp021 utilizes a unique antiterminator protein, Gp17, essential for gene expression and phage replication. This non-lambdoid phage shows partial restoration of virus production in host Nus mutants when Gp17 is overexpressed.
Area of Science:
- Bacteriophage biology
- Molecular genetics
- Microbial genetics
Background:
- Coliphage mEp021 is a non-lambdoid phage requiring host factor Nus for its life cycle.
- It possesses a unique immunity repressor and an Nλ-like antiterminator protein, Gp17.
Purpose of the Study:
- To investigate the function of the Gp17 antiterminator protein and its interaction with nut sites in coliphage mEp021.
- To understand the role of host factor Nus in mEp021 replication and Gp17 activity.
Main Methods:
- Analysis of plasmid constructs with nut sites, transcription terminators, and GFP reporter genes.
- Infection assays using wild-type and mutant mEp021 phages in various host Nus mutants.
- Site-directed mutagenesis of the Gp17 arginine-rich motif (ARM).
Main Results:
- Gp17 expression is crucial for high reporter gene fluorescence, indicating antitermination activity at nut sites.
- Mutations in Gp17's ARM abolish its antiterminator function.
- Transcripts downstream of terminators are produced only when Gp17 is expressed.
- Overexpression of Gp17 partially restores mEp021 production in Nus-mutant hosts, unlike phage lambda.
Conclusions:
- Coliphage mEp021 Gp17 functions as an antiterminator, enabling read-through transcription at multiple nut sites, including a distant nutR2 site.
- The phage exhibits partial independence from host factor Nus for replication when Gp17 is overexpressed.
- Gp17's mechanism differs from canonical lambdoid N proteins, particularly in its interaction with host Nus factors.
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