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Updated: Aug 9, 2025

Using the E1A Minigene Tool to Study mRNA Splicing Changes
Published on: April 22, 2021
Reversal of malignant ADAR1 splice isoform switching with Rebecsinib
Leslie A Crews1, Wenxue Ma2, Luisa Ladel2
1Department of Medicine, Division of Regenerative Medicine, Sanford Stem Cell Institute, University of California, San Diego, La Jolla, CA 92037, USA; Moores Cancer Center, University of California, San Diego, La Jolla, CA 92093, USA.
Abstract:
Adenosine deaminase acting on RNA1 (ADAR1) preserves genomic integrity by preventing retroviral integration and retrotransposition during stress responses. However, inflammatory-microenvironment-induced ADAR1p110 to p150 splice isoform switching drives cancer stem cell (CSC) generation and therapeutic resistance in 20 malignancies. Previously, predicting and preventing ADAR1p150-mediated malignant RNA editing represented a significant challenge. Thus, we developed lentiviral ADAR1 and splicing reporters for non-invasive detection of splicing-mediated ADAR1 adenosine-to-inosine (A-to-I) RNA editing activation; a quantitative ADAR1p150 intracellular flow cytometric assay; a selective small-molecule inhibitor of splicing-mediated ADAR1 activation, Rebecsinib, which inhibits leukemia stem cell (LSC) self-renewal and prolongs humanized LSC mouse model survival at doses that spare normal hematopoietic stem and progenitor cells (HSPCs); and pre-IND studies showing favorable Rebecsinib toxicokinetic and pharmacodynamic (TK/PD) properties. Together, these results lay the foundation for developing Rebecsinib as a clinical ADAR1p150 antagonist aimed at obviating malignant microenvironment-driven LSC generation.
Insights
Adenosine deaminase acting on RNA1 (ADAR1) promotes cancer by altering RNA editing. A new inhibitor, Rebecsinib, effectively targets this process in leukemia stem cells, offering a promising therapeutic strategy.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Adenosine deaminase acting on RNA1 (ADAR1) is crucial for genomic stability, preventing retroviral elements during stress.
- Aberrant ADAR1 splicing (ADAR1p110 to p150) in inflammatory environments drives cancer stem cell (CSC) generation and treatment resistance in numerous cancers.
- Targeting ADAR1p150-mediated RNA editing has been a significant challenge in cancer therapy.
Purpose of the Study:
- To develop methods for detecting and inhibiting ADAR1p150-mediated RNA editing in cancer.
- To evaluate the efficacy of a novel small-molecule inhibitor, Rebecsinib, against leukemia stem cells (LSCs).
Main Methods:
- Development of lentiviral reporters for non-invasive detection of ADAR1 RNA editing.
- Establishment of a quantitative flow cytometric assay for ADAR1p150.
- In vitro and in vivo testing of Rebecsinib in LSC and humanized mouse models.
- Pre-IND toxicokinetic and pharmacodynamic studies of Rebecsinib.
Main Results:
- Successful development of reporters and assays for ADAR1 RNA editing detection.
- Rebecsinib demonstrated inhibition of LSC self-renewal and prolonged survival in LSC mouse models.
- Rebecsinib exhibited favorable toxicokinetic and pharmacodynamic properties in pre-IND studies.
- Rebecsinib selectively targeted LSCs while sparing normal hematopoietic stem and progenitor cells (HSPCs).
Conclusions:
- The developed tools enable non-invasive monitoring of ADAR1 RNA editing activation.
- Rebecsinib is a potent inhibitor of splicing-mediated ADAR1 activation, targeting LSC generation.
- Rebecsinib shows promise as a clinical candidate for treating malignancies driven by ADAR1p150.
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