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Updated: Aug 9, 2025

Profiling of Permethylated Mucin O-glycans Using Matrix-assisted Laser Desorption/Ionization Time-of-flight Mass Spectrometry
Published on: June 20, 2025
Molecular Recognition of GalNAc in Mucin-Type O-Glycosylation
Ignacio Sanz-Martinez1,2, Sandra Pereira1,2, Pedro Merino1,2
1Institute of Biocomputation and Physics of Complex Systems (BIFI), Glycobiology Unit, University of Zaragoza, Mariano Esquillor s/n, Campus Rio Ebro, Edificio I+D, 50018 Zaragoza, Spain.
Abstract:
Acetylgalactosamine (GalNAc)-type O-glycosylation is an essential posttranslational modification (PTM) that plays fundamental roles in biology. Malfunction of this PTM is exemplified by the presence of truncated O-glycans in cancer. For instance, the glycoprotein MUC1 is overexpressed in many tumor tissues and tends to carry simple oligosaccharides that allow for the presentation of different tumor-associated antigens, such as the Tn or sTn antigens (GalNAc-α-1-O-Thr/Ser and Neu5Acα2-6GalNAcα1-O-Ser/Thr, respectively). In other cases, such as tumoral calcinosis associated with O-glycosylation of the fibroblast growth factor 23, O-glycans are absent or less abundant. Significant progress has been made in determining the three-dimensional structures of biomolecules that recognize GalNAc, such as antibodies, lectins, mucinases, GalNAc-transferases, and other glycosyltransferases. Analysis of the complexes between these entities and GalNAc-containing glycopeptides, in most cases derived from crystallographic or NMR analysis, provides an understanding of the key structural elements that control molecular recognition of these glycopeptides. Here, we describe and compare the binding sites of these proteins in detail, focusing on how the GalNAc moieties interact selectively with them. We also summarize the differences and similarities in GalNAc recognition. In general, the recognition of GalNAc-containing glycopeptides is determined by hydrogen bonds between hydroxyl groups and the N-acetyl group of GalNAc with proteins, as well as CH-π contacts in which the hydrophobic α-face of the sugar and the methyl group of NHAc can be involved. The latter interaction usually provides the basis for selectivity. It is worth noting that binding of these glycopeptides depends primarily on recognition of the sugar moiety, with some exceptions such as a few anti-MUC1 antibodies that primarily recognize the peptide backbone and use the sugar to facilitate shape complementarity or to establish a limited number of interactions with the protein. Focusing specifically on the GalNAc moiety, we can observe that there is some degeneracy of interactions within the same protein families, likely due to substrate flexibility. However, when all studied proteins are considered together, despite the commonalities within each protein family, no pattern can be discerned between the different families, apart from the presence of common residues such as Tyr, His, or Asp, which are responsible for hydrogen bonds. The lack of a pattern can be anticipated, given the diverse functions of mucinases, glycosyltransferases, antibodies, and lectins. Finally, it is important to point out that the conformational differences observed in solution in glycopeptides bearing GalNAc-α-1-O-Ser or GalNAc-α-1-O-Thr also can be found in the bound state. This unique characteristic is exploited, for instance, by the enzyme C1GalT1 to broadly glycosylate both acceptor substrates. The findings summarized in this review may contribute to the rational structure-guided development of therapeutic vaccines, novel diagnostic tools for early cancer detection, and new cancer treatments for cancer with tailored anti-Tn or anti-STn antibodies or new drugs to inhibit GalNAc-T isoenzymes.
Insights
Acetylgalactosamine (GalNAc)-type O-glycosylation is crucial in biology but altered in cancer. This review details how proteins recognize GalNAc, aiding cancer diagnostics and therapeutics.
Area of Science:
- Biochemistry
- Structural Biology
- Glycobiology
Background:
- Acetylgalactosamine (GalNAc)-type O-glycosylation is a vital posttranslational modification with significant roles in biological processes.
- Aberrant O-glycosylation, characterized by truncated glycans, is a hallmark of various cancers, exemplified by MUC1 overexpression presenting tumor-associated antigens like Tn and sTn.
- Defects in O-glycosylation also manifest as absent or reduced O-glycans, as seen in tumoral calcinosis linked to fibroblast growth factor 23.
Approach:
- This review analyzes the three-dimensional structures of diverse biomolecules that interact with GalNAc, including antibodies, lectins, mucinases, and glycosyltransferases.
- Structural data from crystallographic and NMR analyses of complexes with GalNAc-containing glycopeptides are examined to understand recognition mechanisms.
- The study details and compares the binding sites of these proteins, focusing on selective interactions with GalNAc moieties.
Key Points:
- GalNAc recognition primarily involves hydrogen bonds with hydroxyl and N-acetyl groups, and CH-π contacts with the sugar's α-face and NHAc methyl group, which confer selectivity.
- While most interactions focus on the sugar moiety, some antibodies (e.g., anti-MUC1) recognize the peptide backbone, using GalNAc for shape complementarity or limited interactions.
- Common residues like Tyr, His, and Asp mediate hydrogen bonds, but distinct functional roles of proteins (mucinases, glycosyltransferases, antibodies, lectins) prevent a universal recognition pattern across families.
Conclusions:
- Conformational flexibility of GalNAc-bearing glycopeptides in solution is retained in the bound state, a feature utilized by enzymes like C1GalT1 for broad substrate glycosylation.
- Understanding these GalNAc-protein interactions can guide the development of targeted cancer therapies, including therapeutic vaccines and diagnostic tools.
- Structure-guided design of novel therapeutics, such as tailored anti-Tn/anti-STn antibodies or inhibitors of GalNAc-T isoenzymes, holds promise for improved cancer treatment.
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