Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Imaging Biological Samples with Optical Microscopy01:18

Imaging Biological Samples with Optical Microscopy

4.9K
Optical microscopy uses optic principles to provide detailed images of samples. Antonie van Leeuwenhoek designed the first compound optical microscope in the 17th century to visualize blood cells, bacteria, and yeast cells. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes with enhanced magnification and resolution.
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
4.9K
Computed Tomography01:10

Computed Tomography

4.7K
Tomography refers to imaging by sections. Computed tomography (CT) is a non-invasive imaging technique that uses computers to analyze several cross-sectional X-rays to reveal minute details about structures in the body.
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
4.7K
Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

2.5K
Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
2.5K
Phase Contrast and Differential Interference Contrast Microscopy01:26

Phase Contrast and Differential Interference Contrast Microscopy

8.3K
Phase-Contrast Microscopes
In-phase-contrast microscopes, interference between light directly passing through a cell and light refracted by cellular components is used to create high-contrast, high-resolution images without staining. It is the oldest and simplest type of microscope that creates an image by altering the wavelengths of light rays passing through the specimen. Altered wavelength paths are created using an annular stop in the condenser. The annular stop produces a hollow cone of...
8.3K
Three-Dimensional Microscopy in Microbiology01:28

Three-Dimensional Microscopy in Microbiology

118
Three-dimensional imaging techniques are essential in cell biology, allowing researchers to visualize intricate cellular structures with high resolution. Two prominent methods, Differential Interference Contrast Microscopy (DIC) and Confocal Scanning Laser Microscopy (CSLM), provide distinct advantages for imaging live and thick specimens, respectively.Differential Interference Contrast MicroscopyDIC microscopy enhances contrast in transparent, unstained samples by converting phase...
118
Deconvolution01:20

Deconvolution

217
Deconvolution, also known as inverse filtering, is the process of extracting the impulse response from known input and output signals. This technique is vital in scenarios where the system's characteristics are unknown, and they must be inferred from the observable signals.
Deconvolution involves several mathematical techniques to derive the impulse response. One common approach is polynomial division. In this method, the input and output sequences are treated as coefficients of...
217

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Comparing the Use of Measured and Smoothed Data in Forecasting Visual Field Tests Using Deep Learning.

Ophthalmology science·2026
Same author

A Hybrid Deep Learning-Based Approach for Visual Field Test Forecasting.

Ophthalmology science·2025
Same author

Normative Variability in Retinal Nerve Fiber Layer Thickness: Does It Matter Where the Peaks Are?

Translational vision science & technology·2025
Same author

Cerebroplacental ratio in low-risk pregnancies: the RATIO37 trial.

Lancet (London, England)·2024
Same author

Progesterone improves motor coordination impairments caused by postnatal hypoxic-ischemic brain insult in neonatal male rats.

Pediatrics and neonatology·2024
Same author

Role of inflammation and immune response in the pathogenesis of uterine fibroids: Including their negative impact on reproductive outcomes.

Journal of reproductive immunology·2024

Related Experiment Video

Updated: Aug 9, 2025

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales
09:56

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales

Published on: August 21, 2019

7.0K

Mixed multiscale BM4D for three-dimensional optical coherence tomography denoising.

Ashkan Abbasi1, Amirhassan Monadjemi2, Leyuan Fang3

  • 1Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, USA.

Computers in Biology and Medicine
|February 24, 2023
PubMed
Summary

A new multiscale method for optical coherence tomography (OCT) image denoising, mixed multiscale BM4D (mmBM4D), simplifies computations and enhances image quality. mmBM4D outperforms the original BM4D and matches state-of-the-art methods in OCT denoising.

Keywords:
BM4DMultiscale denoisingOptical coherence tomographySparse representationsWavelets

More Related Videos

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
13:43

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions

Published on: June 24, 2013

14.2K
Multimodal Volumetric Retinal Imaging by Oblique Scanning Laser Ophthalmoscopy oSLO and Optical Coherence Tomography OCT
12:22

Multimodal Volumetric Retinal Imaging by Oblique Scanning Laser Ophthalmoscopy oSLO and Optical Coherence Tomography OCT

Published on: August 4, 2018

8.6K

Related Experiment Videos

Last Updated: Aug 9, 2025

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales
09:56

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales

Published on: August 21, 2019

7.0K
Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
13:43

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions

Published on: June 24, 2013

14.2K
Multimodal Volumetric Retinal Imaging by Oblique Scanning Laser Ophthalmoscopy oSLO and Optical Coherence Tomography OCT
12:22

Multimodal Volumetric Retinal Imaging by Oblique Scanning Laser Ophthalmoscopy oSLO and Optical Coherence Tomography OCT

Published on: August 4, 2018

8.6K

Area of Science:

  • Biomedical Imaging
  • Image Processing
  • Computational Science

Background:

  • Block matching and 4D filtering (BM4D) is a widely used image denoising technique.
  • Existing BM4D methods face computational challenges when extended to 3D applications like optical coherence tomography (OCT).
  • Denoising detail subbands in multiscale processing can be computationally intensive.

Purpose of the Study:

  • To propose a computationally efficient multiscale extension of BM4D for 3D OCT image denoising.
  • To simplify multiscale processing by avoiding direct denoising of detail subbands.
  • To evaluate the performance of the proposed method against existing techniques and assess its impact on downstream tasks.

Main Methods:

  • Developed a multiscale construction method in 2D and extended it to 3D.
  • Proposed mixed multiscale BM4D (mmBM4D) specifically for OCT image denoising.
  • Tested mmBM4D on three public OCT datasets from various imaging devices.

Main Results:

  • mmBM4D significantly outperforms the original BM4D, showing improvements of over 0.68 dB in peak-signal-to-noise-ratio (PSNR) on one dataset.
  • Achieved substantial enhancements in mean to standard deviation ratio, contrast to noise ratio, and equivalent number of looks on other datasets.
  • Demonstrated competitive performance compared to state-of-the-art OCT denoising methods.

Conclusions:

  • The proposed mmBM4D method offers an effective and computationally feasible approach for 3D OCT image denoising.
  • mmBM4D preserves image quality, which is crucial for accurate downstream applications like retinal layer segmentation.
  • This multiscale extension enhances the applicability of BM4D in complex 3D imaging scenarios.