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Updated: Aug 8, 2025

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
Published on: September 17, 2017
Zwitterionic or Not? Fast and Reliable Structure Determination by Combining Crystal Structure Prediction and
Federica Bravetti1, Raffaele E Russo1,2, Simone Bordignon1
1Dipartimento di Chimica e Centro di Eccellenza NIS, Università di Torino, v. P. Giuria 7, 10125 Torino, Italy.
Crystal Structure Prediction combined with solid-state NMR (CSP-NMRX) accurately determined the crystal structures of three pyridine dicarboxylic acid isomers. This powerful method identified unique zwitterionic and hybrid states in these compounds.
Area of Science:
- Solid-state chemistry
- Crystallography
- Spectroscopy
Background:
- Crystal Structure Prediction (CSP) offers insights into solid-state packing without diffraction data.
- Coupling CSP with solid-state NMR (SSNMR) enhances predictive accuracy, forming CSP-NMR crystallography (CSP-NMRX).
- Determining the solid-state form (zwitterionic or not) of molecules like pyridine dicarboxylic acids is crucial.
Purpose of the Study:
- To apply the CSP-NMRX method for accurate crystal structure determination of three pyridine dicarboxylic acid isomers.
- To investigate the zwitterionic nature and solid-state structures of quinolinic, dipicolinic, and dinicotinic acids.
- To validate the efficacy of CSP-NMRX in predicting and confirming crystal structures.
Main Methods:
- Utilized mono- and bidimensional SSNMR experiments (e.g., 1H MAS, 13C/15N CPMAS, 1H DQ MAS, 1H-13C HETCOR) to ascertain molecular structure and arrangement.
- Employed advanced SSNMR techniques (14N-1H PM pulse, RESPDOR) for precise N-H distance measurements.
- Performed CSP calculations and used Root Mean Square Errors (RMSEs) of computed vs. experimental chemical shifts for structure selection.
Main Results:
- Successfully determined the crystal structures of quinolinic (zwitterionic), dipicolinic (non-zwitterionic), and dinicotinic acids (exhibiting a zwitterionic-non-zwitterionic continuum).
- Confirmed the hybrid nature of dinicotinic acid with a shared proton using refined SSNMR experiments.
- Demonstrated a strong agreement between CSP-NMRX selected structures and experimental data, with RMSEs aiding in accurate structure selection.
Conclusions:
- CSP-NMRX is a highly effective method for precise crystal structure determination, especially for complex molecules like pyridine dicarboxylic acids.
- SSNMR provides essential molecular input, reducing CSP computational load and enabling reliable structure selection.
- The study highlights the nuanced solid-state behavior of dinicotinic acid, showcasing a proton sharing phenomenon.
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