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Testing the Role of Multicopy Plasmids in the Evolution of Antibiotic Resistance
Published on: May 2, 2018
Genomic characterization of two carbapenem-resistant Serratia marcescens isolates causing bacteremia: Emergence of
Junli Jia1, Lisha Huang1, Long Zhang1
1Department of Respiratory, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Abstract:
The occurrence and transmission of carbapenemase-producing-Enterobacterales (CPE) on a global scale has become a major issue. Clinical reports are rarely providing information on the genomic and plasmid features of carbapenem-resistant Serratia marcescens. Our objective was to investigate the resistance and transmission dynamics of two carbapenem-resistant S. marcescens that are resistant to carbapenem and have caused bacteremia in China. Blood specimens were taken from two individuals with bacteremia. Multiplex PCR was employed to identify genes that code for carbapenemase. Antimicrobial susceptibility tests and plasmid analysis were conducted on S. marcescens isolates SM768 and SM4145. The genome of SM768 and SM4145 were completely sequenced using NovaSeq 6000-PE150 and PacBio RS II platforms. Antimicrobial resistance genes (ARGs) were predicted using the ResFinder tool. S1 nuclease pulsed-field gel electrophoresis (S1-PFGE) and southern blotting were employed to analyze plasmids. Two S. marcescens that produced KPC-2 were identified from bloodstream infections. The antimicrobial susceptibility testing demonstrated that both of the isolates had a resistance to various antibiotics. The whole-genome sequence (WGS) and plasmid analysis revealed the presence of bla KPC-2-bearing IncR plasmids and multiple plasmid-borne antimicrobial resistance genes in the isolates. Our comparative plasmid analysis suggested that the two IncR plasmids identified in this study could be derived from a common ancestor. Our findings revealed the emergence of bla KPC-2-bearing IncR plasmid in China, which could be a hindrance to the transmission of KPC-2-producing S. marcescens in clinical settings.
Insights
Carbapenemase-producing Enterobacterales (CPE) are a global threat. This study details two carbapenem-resistant Serratia marcescens strains from China, identifying KPC-2 carbapenemase on IncR plasmids, crucial for understanding transmission dynamics.
Area of Science:
- Clinical Microbiology
- Genomics
- Antimicrobial Resistance
Background:
- Carbapenemase-producing Enterobacterales (CPE) pose a significant global health challenge.
- Limited genomic and plasmid data exist for carbapenem-resistant Serratia marcescens bloodstream infections.
- Understanding resistance mechanisms and transmission is vital for controlling CPE spread.
Purpose of the Study:
- To investigate the genomic and plasmid features of two carbapenem-resistant Serratia marcescens isolates from bacteremia cases in China.
- To characterize the antimicrobial resistance profiles and transmission dynamics of these specific isolates.
Main Methods:
- Blood specimens from two bacteremia patients were analyzed.
- Multiplex PCR identified carbapenemase genes.
- Antimicrobial susceptibility testing, whole-genome sequencing (NovaSeq, PacBio), plasmid analysis (S1-PFGE, southern blotting), and ARG prediction (ResFinder) were performed.
Main Results:
- Two Serratia marcescens isolates (SM768, SM4145) producing KPC-2 carbapenemase were identified from bloodstream infections.
- Both isolates exhibited resistance to multiple antibiotics.
- Whole-genome and plasmid analysis revealed blaKPC-2-bearing IncR plasmids and multiple plasmid-borne antimicrobial resistance genes, suggesting a common IncR plasmid ancestor.
Conclusions:
- The emergence of blaKPC-2-bearing IncR plasmids in China is confirmed.
- These findings provide critical genomic and plasmid insights into KPC-2-producing Serratia marcescens.
- Understanding these plasmid dynamics is essential for mitigating the transmission of KPC-2-producing S. marcescens in clinical settings.
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