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Updated: Aug 8, 2025

Constructing Mutants in Serotype 1 Streptococcus pneumoniae strain 519/43
Published on: September 11, 2020
Inducible Mega-Mediated Macrolide Resistance Confers Heteroresistance in Streptococcus pneumoniae
Sarah Lohsen1, David S Stephens1,2
1Departments of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Abstract:
In Streptococcus pneumoniae (Spn), the 5.4 to 5.5 kb Macrolide Genetic Assembly (Mega) encodes an efflux pump (Mef[E]) and a ribosomal protection protein (Mel) conferring antibiotic resistance to commonly used macrolides in clinical isolates. We found the macrolide-inducible Mega operon provides heteroresistance (more than 8-fold range in MICs) to 14- and 15-membered ring macrolides. Heteroresistance is commonly missed during traditional clinical resistance screens but is highly concerning as resistant subpopulations can persist despite treatment. Spn strains containing the Mega element were screened via Etesting and population analysis profiling (PAP). All Mega-containing Spn strains screened displayed heteroresistance by PAP. The heteroresistance phenotype was linked to the mRNA expression of the mef(E)/mel operon of the Mega element. Macrolide induction uniformly increased Mega operon mRNA expression across the population, and heteroresistance was eliminated. A deletion of the 5' regulatory region of the Mega operon results in a mutant deficient in induction as well as in heteroresistance. The mef(E)L leader peptide sequence of the 5' regulatory region was required for induction and heteroresistance. Treatment with a noninducing 16-membered ring macrolide antibiotic did not induce the mef(E)/mel operon or eliminate the heteroresistance phenotype. Thus, inducibility of the Mega element by 14- and 15-membered macrolides and heteroresistance are linked in Spn. The stochastic variation in mef(E)/mel expression in a Spn population containing Mega provides the basis for heteroresistance.
Insights
The Macrolide Genetic Assembly (Mega) in Streptococcus pneumoniae causes heteroresistance to macrolide antibiotics. This resistance is inducible and linked to the expression of the mef(E)/mel operon.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Streptococcus pneumoniae (Spn) clinical isolates often harbor the Macrolide Genetic Assembly (Mega) element.
- The Mega element encodes Mef(E) efflux pump and Mel ribosomal protection protein, conferring macrolide resistance.
- Heteroresistance, a significant challenge in clinical settings, involves a wide range of minimum inhibitory concentrations (MICs) within a bacterial population.
Purpose of the Study:
- To investigate the mechanism of macrolide heteroresistance conferred by the Mega element in Spn.
- To determine the role of Mega operon inducibility in the heteroresistance phenotype.
- To identify regulatory elements within the Mega operon responsible for induction and resistance.
Main Methods:
- Screening of Spn strains with Mega element using Etest and Population Analysis Profiling (PAP).
- Quantification of mef(E)/mel operon mRNA expression under various macrolide treatments.
- Analysis of mutant strains with deletions in the 5' regulatory region of the Mega operon.
Main Results:
- All Mega-containing Spn strains exhibited heteroresistance to 14- and 15-membered ring macrolides.
- Macrolide induction uniformly increased Mega operon mRNA expression and eliminated heteroresistance.
- A deletion in the 5' regulatory region abolished induction and heteroresistance, highlighting the role of the mef(E)L leader peptide.
Conclusions:
- Macrolide inducibility of the Mega element is directly linked to heteroresistance in Spn.
- Stochastic variation in mef(E)/mel expression within a population underlies the heteroresistance phenotype.
- Understanding this mechanism is crucial for accurate clinical resistance screening and effective antibiotic treatment strategies.
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