Related Experiment Video
Updated: Aug 8, 2025

Growing a Cystic Fibrosis-Relevant Polymicrobial Biofilm to Probe Community Phenotypes
Published on: April 19, 2024
Polymicrobial infections and antibiotic treatment patterns for cystic fibrosis pulmonary exacerbations
Anna V Faino1, Lucas R Hoffman2, Ronald L Gibson2
1Core for Biostatistics, Epidemiology and Analytics in Research, Seattle Children's Research Institute, USA.
Background:
No data exist to guide antibiotic selection among people with CF (PwCF) with respiratory cultures positive for multiple CF-related bacteria (polymicrobial infections). This study aimed to describe the number of polymicrobial in-hospital treated pulmonary exacerbations (PEx), to determine the proportion of polymicrobial PEx where antibiotics were prescribed with activity against all bacteria detected (termed complete antibiotic coverage), and to determine clinical and demographic factors associated with complete antibiotic coverage.
Methods:
Retrospective cohort study using the CF Foundation Patient Registry-Pediatric Health Information System dataset. Children aged 1-21 years with an in-hospital treated PEx from 2006 to 2019 were eligible for inclusion. Bacterial culture positivity was based on any positive respiratory culture in the 12 months prior to a study PEx.
Results:
A total of 4,923 children contributed 27,669 total PEx of which 20,214 were polymicrobial; of these, 68% of PEx had complete antibiotic coverage. In regression modeling, a prior PEx with complete antibiotic coverage for MRSA was associated with a higher likelihood of having complete antibiotic coverage at a subsequent study PEx (OR (95% CI) 3.48 (2.50, 4.83)).
Conclusions:
The majority of children with CF hospitalized for polymicrobial PEx were prescribed complete antibiotic coverage. Prior PEx treatment with complete antibiotic coverage predicted complete antibiotic coverage at a future PEx for all bacteria studied. Studies are needed comparing outcomes of polymicrobial PEx treated with different antibiotic coverages to optimize PEx antibiotic selection.
Insights
Most children with cystic fibrosis (CF) hospitalized for pulmonary exacerbations (PEx) received complete antibiotic coverage. Prior complete antibiotic coverage for MRSA predicted future complete coverage, guiding antibiotic selection for CF PEx.
Area of Science:
- Pulmonology
- Infectious Diseases
- Pediatric Healthcare
Background:
- Limited guidance exists for antibiotic selection in cystic fibrosis (CF) patients with polymicrobial respiratory infections.
- Pulmonary exacerbations (PEx) in CF are often polymicrobial, necessitating effective antibiotic strategies.
- Understanding antibiotic coverage patterns is crucial for optimizing treatment in CF.
Purpose of the Study:
- To quantify polymicrobial PEx in hospitalized CF patients.
- To determine the proportion of PEx receiving complete antibiotic coverage against all detected bacteria.
- To identify factors associated with complete antibiotic coverage during PEx.
Main Methods:
- Retrospective cohort study utilizing the CF Foundation Patient Registry-Pediatric Health Information System.
- Inclusion of children aged 1-21 years with in-hospital treated PEx (2006-2019).
- Bacterial culture data from the 12 months preceding PEx were analyzed.
Main Results:
- Over 20,000 polymicrobial PEx were analyzed, with 68% receiving complete antibiotic coverage.
- Prior PEx with complete antibiotic coverage for MRSA significantly increased the likelihood of complete coverage in subsequent PEx (OR 3.48).
- The majority of CF patients hospitalized for polymicrobial PEx were prescribed appropriate antibiotic regimens.
Conclusions:
- Most children with CF experiencing PEx receive broad-spectrum antibiotic coverage.
- Complete antibiotic coverage in a prior PEx is a strong predictor of complete coverage in future PEx.
- Further research comparing outcomes of different antibiotic strategies for polymicrobial PEx is warranted.
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