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Published on: August 14, 2019
Predicting anti-cancer activity in flavonoids: a graph theoretic approach
Simon Mukwembi1, Farai Nyabadza2
1School of Mathematics, University of The Witwatersrand, Johannesburg, South Africa.
Abstract:
In drug design, there are two major causes of drug failure in the clinic. First, the drug has to work, and second, the drug should be safe. Identifying compounds that work for certain ailments require enormous experimental time and, in general, is cost intensive. In this paper, we are concerned with melanoma, a special type of cancer that affects the skin. In particular, we seek to provide a mathematical model that can predict the ability of flavonoids, a vast and natural class of compounds that are found in plants, in reversing or alleviating melanoma. The basis for our model is the conception of a new graph parameter called, for lack of better terminology, graph activity, which captures melanoma cancer healing properties of the flavonoids. With a superior coefficient of determination, [Formula: see text], the new model faithfully reproduces anti-cancer activities of some known data-sets. We demonstrate that the model can be used to rank the healing abilities of flavonoids which could be a powerful tool in the screening, and identification, of compounds for drug candidates.
Insights
This study introduces a new mathematical model using graph activity to predict the melanoma healing potential of plant-derived flavonoids. The model aids in identifying effective and safe drug candidates for melanoma treatment.
Area of Science:
- Medicinal Chemistry
- Computational Biology
- Oncology
Background:
- Drug development faces high failure rates due to efficacy and safety issues.
- Melanoma treatment requires efficient identification of effective therapeutic compounds.
- Flavonoids, natural plant compounds, show potential for anti-cancer activity.
Purpose of the Study:
- To develop a mathematical model for predicting the anti-melanoma efficacy of flavonoids.
- To introduce a novel graph parameter, 'graph activity,' to quantify healing properties.
- To facilitate the screening and identification of potential flavonoid-based drug candidates for melanoma.
Main Methods:
- Development of a novel mathematical model based on a new graph parameter called 'graph activity'.
- Application of the model to predict the anti-melanoma properties of flavonoids.
- Validation of the model using existing datasets and evaluation of its predictive accuracy.
Main Results:
- The developed model demonstrates a high coefficient of determination, indicating accurate prediction of anti-cancer activities.
- The 'graph activity' parameter effectively captures the melanoma healing properties of flavonoids.
- The model successfully reproduces anti-cancer activities from known datasets.
Conclusions:
- The novel mathematical model and 'graph activity' parameter offer a powerful tool for predicting flavonoid efficacy against melanoma.
- This approach can significantly accelerate the screening and identification of promising flavonoid compounds for drug development.
- The model aids in prioritizing compounds for further investigation, potentially reducing drug development costs and timelines.
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