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Updated: Aug 8, 2025

Single-Molecule Förster Resonance Energy Transfer Methods for Real-Time Investigation of the Holliday Junction Resolution by GEN1
Published on: September 18, 2019
The transition state region in nonsynchronous concerted reactions
Sara Gómez1, Natalia Rojas-Valencia2, Alejandro Toro-Labbé3
1Scuola Normale Superiore, Classe di Scienze, Piazza dei Cavalieri 7, 56126 Pisa, Italy.
Chemical reactions involve distinct reactant, transition state, and product regions along the intrinsic reaction coordinate. For nonsynchronous reactions, electron activity extends beyond the transition state, influencing reactant and product regions.
Area of Science:
- Chemical Kinetics
- Computational Chemistry
Background:
- The intrinsic reaction coordinate (IRC) describes reaction pathways.
- Traditionally, the transition state (TS) region is associated with electronic activity.
Purpose of the Study:
- To investigate the spatial extent of electronic activity during chemical reactions.
- To analyze the behavior of electron flux and bonding changes along the IRC.
Main Methods:
- Analysis of critical and vanishing points of the reaction force along the IRC.
- Utilizing descriptors like synchronicity, reaction electron flux, and Wiberg bond orders.
Main Results:
- Five key coordinates define reactant, TS, and product regions on the IRC.
- Nonsynchronous reactions show electronic activity extending beyond the traditional TS region into reactant and product areas.
Conclusions:
- The TS region may effectively extend into reactant and product areas for nonsynchronous reactions.
- Understanding electron activity distribution refines models of chemical reaction dynamics.
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