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Related Concept Videos

Reaction Mechanisms03:06

Reaction Mechanisms

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Chemical reactions often occur in a stepwise fashion, involving two or more distinct reactions taking place in a sequence. A balanced equation indicates the reacting species and the product species, but it reveals no details about how the reaction occurs at the molecular level. The reaction mechanism (or reaction path) provides details regarding the precise, step-by-step process by which a reaction occurs.
For instance, the decomposition of ozone appears to follow a mechanism with two steps:
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Predicting Reaction Outcomes02:24

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Kinetics describes the rate and path by which a reaction occurs. In contrast, thermodynamics deals with state functions and describes the properties, behavior, and components of a system. It is not concerned with the path taken by the process and cannot address the rate at which a reaction occurs. Although it does provide information about what can happen during a reaction process, it does not describe the detailed steps of what appears on an atomic or a molecular level. On the other hand,...
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Multi-Step Reactions02:31

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Chemical reactions often occur in a stepwise fashion involving two or more distinct reactions taking place in a sequence. A balanced equation indicates the reacting species and the product species, but it reveals no details about how the reaction occurs at the molecular level. The reaction mechanism (or reaction path) provides details regarding the precise, step-by-step process by which a reaction occurs. Each of the steps in a reaction mechanism is called an elementary reaction. These...
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Coupled Reactions01:17

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Cellular processes such as building and breaking down complex molecules occur through stepwise chemical reactions. Some of these chemical reactions are spontaneous and release energy, whereas others require energy to proceed. Cells often couple the energy-releasing reaction with the energy-requiring one to carry out important cell functions. 
Energy in adenosine triphosphate or ATP molecules is easily accessible to do work. ATP powers the majority of energy-requiring cellular reactions....
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Atomic Absorption Spectroscopy: Atomization Methods01:25

Atomic Absorption Spectroscopy: Atomization Methods

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Atomic Absorption Spectroscopy (AAS) atomizes samples through flame atomization or electrothermal atomization. Flame atomization typically involves a nebulizer and spray chamber assembly to combine the sample with a fuel–oxidant mixture, creating a fine aerosol mist that enters a burner. Typically, the fuel and oxidant are combined in an approximately stoichiometric ratio. However, for atoms that are easily oxidized, a fuel-rich mixture may be more advantageous. Only about 5% of the...
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Chemical Shift: Internal References and Solvent Effects01:17

Chemical Shift: Internal References and Solvent Effects

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In an NMR sample, precise measurement of the absolute absorption frequencies of nuclei is difficult. A standard internal reference compound is added, and the frequency difference between the reference signal and sample signals is measured.
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
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Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
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High-throughput ab initio reaction mechanism exploration in the cloud with automated multi-reference validation.

Jan P Unsleber1, Hongbin Liu2, Leopold Talirz3

  • 1Laboratory of Physical Chemistry and NCCR Catalysis, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland.

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Summary

AutoRXN automates complex quantum chemical calculations for molecular systems, reducing the need for expert knowledge. This high-throughput workflow enhances computational chemistry research by providing accurate energy and property estimates.

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Area of Science:

  • Computational Chemistry
  • Quantum Chemistry
  • Materials Science

Background:

  • Quantum chemical calculations are essential for molecular matter studies but require significant manual input and expertise.
  • Automation of these calculations can lower the barrier to entry for researchers and accelerate discovery.

Purpose of the Study:

  • To present AutoRXN, an automated workflow for high-throughput electronic structure calculations.
  • To enable autonomous reaction mechanism exploration with minimal operator interference.

Main Methods:

  • Utilizes density functional theory (DFT) for initial structure optimization and energy calculations.
  • Employs coupled cluster (CC) methods for accurate energy and property estimation of optimized structures.
  • Integrates multi-reference diagnostics and automated multi-configurational calculations to validate CC results.

Main Results:

  • Demonstrates the capability of AutoRXN for autonomous reaction mechanism exploration.
  • Successfully applied to study the mode of action of a homogeneous catalyst for asymmetric ketone reduction.
  • Highlights the workflow's autonomy, stability, and efficiency in cloud-based computational campaigns.

Conclusions:

  • AutoRXN significantly streamlines and automates advanced quantum chemical calculations.
  • The workflow democratizes access to high-throughput computational chemistry, reducing reliance on specialized expertise.
  • AutoRXN facilitates large-scale computational studies, accelerating scientific discovery in molecular systems.