Related Experiment Video
Updated: Aug 8, 2025

Analyzing Mitochondrial Morphology Through Simulation Supervised Learning
Published on: March 3, 2023
Learning effective stochastic differential equations from microscopic simulations: Linking stochastic numerics to
Felix Dietrich1, Alexei Makeev2, George Kevrekidis3
1Department of Informatics, School of Computation, Information and Technology, Technical University of Munich, 80333 Munich, Germany.
Abstract:
We identify effective stochastic differential equations (SDEs) for coarse observables of fine-grained particle- or agent-based simulations; these SDEs then provide useful coarse surrogate models of the fine scale dynamics. We approximate the drift and diffusivity functions in these effective SDEs through neural networks, which can be thought of as effective stochastic ResNets. The loss function is inspired by, and embodies, the structure of established stochastic numerical integrators (here, Euler-Maruyama and Milstein); our approximations can thus benefit from backward error analysis of these underlying numerical schemes. They also lend themselves naturally to "physics-informed" gray-box identification when approximate coarse models, such as mean field equations, are available. Existing numerical integration schemes for Langevin-type equations and for stochastic partial differential equations can also be used for training; we demonstrate this on a stochastically forced oscillator and the stochastic wave equation. Our approach does not require long trajectories, works on scattered snapshot data, and is designed to naturally handle different time steps per snapshot. We consider both the case where the coarse collective observables are known in advance, as well as the case where they must be found in a data-driven manner.
Related Concept Videos
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
Poisson's And Laplace's Equation
Navier–Stokes Equations
Linear Approximation in Time Domain
For a simple pendulum with a mass evenly distributed along its length and the center of mass located at half the pendulum's length,...
Second Derivatives and Laplace Operator
Consider a scalar function. The curl of its...
Divergence and Stokes' Theorems

