Related Experiment Video
Updated: Aug 8, 2025

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
The Hedgehog/GLI signaling pathway activates transcription of Slug (Snail2) in melanoma cells
Pavel Horák1, Kateřina Kreisingerová1, Jiri Réda1
1Department of Transcription and Cell Signaling, Institute of Medical Biochemistry and Laboratory Diagnostics, First Faculty of Medicine, Charles University and General University Hospital in Prague, 12108 Prague, Czech Republic.
Abstract:
In melanoma and other cancers, invasion, epithelial-to-mesenchymal transition, metastasis and cancer stem cell maintenance are regulated by transcription factors including the Snail family. Slug (Snail2) protein generally supports migration and apoptosis resistance. However, its role in melanoma is not completely understood. The present study investigated the transcriptional regulation of the SLUG gene in melanoma. It demonstrated that SLUG is under the control of the Hedgehog/GLI signaling pathway and is activated predominantly by the transcription factor GLI2. The SLUG gene promoter contains a high number of GLI-binding sites. Slug expression is activated by GLI factors in reporter assays and inhibited by GANT61 (GLI inhibitor) and cyclopamine (SMO inhibitor). SLUG mRNA levels are lowered by GANT61 as assessed by reverse transcription-quantitative PCR. Chromatin immunoprecipitation revealed abundant binding of factors GLI1-3 in the four subregions of the proximal SLUG promoter. Notably, melanoma-associated transcription factor (MITF) is an imperfect activator of the SLUG promoter in reporter assays, and downregulation of MITF had no effect on endogenous Slug protein levels. Immunohistochemical analysis confirmed the above findings and showed MITF-negative regions in metastatic melanoma that were positive for GLI2 and Slug. Taken together, the results demonstrated a previously unrecognized transcriptional activation mechanism of the SLUG gene, which may represent its main regulation of expression in melanoma cells.
Insights
The Hedgehog/GLI pathway, primarily GLI2, activates SLUG gene transcription in melanoma. This pathway
Area of Science:
- Oncology
- Molecular Biology
- Gene Regulation
Background:
- The Snail family of transcription factors, including Slug (Snail2), are crucial regulators of cancer progression.
- While Slug protein influences migration and apoptosis resistance, its specific role and regulation in melanoma remain unclear.
Purpose of the Study:
- To investigate the transcriptional regulation of the SLUG gene in melanoma.
- To identify key transcription factors and signaling pathways controlling SLUG expression in melanoma cells.
Main Methods:
- Reporter assays to assess SLUG promoter activity.
- Inhibition studies using GLI and SMO inhibitors (GANT61, cyclopamine).
- Reverse transcription-quantitative PCR (RT-qPCR) for mRNA analysis.
- Chromatin immunoprecipitation (ChIP) to detect transcription factor binding.
- Immunohistochemistry to analyze protein expression in melanoma tissues.
Main Results:
- The Hedgehog/GLI signaling pathway, particularly the transcription factor GLI2, predominantly activates SLUG gene transcription in melanoma.
- The SLUG gene promoter contains numerous GLI-binding sites, and its activity is modulated by GLI factors.
- Inhibitors of GLI (GANT61) and SMO (cyclopamine) decrease SLUG expression.
- GLI1-3 factors bind to the SLUG promoter, while MITF shows limited activation and no significant impact on endogenous Slug levels.
- Metastatic melanoma exhibits MITF-negative regions co-expressing GLI2 and Slug.
Conclusions:
- A novel mechanism of SLUG gene transcriptional activation via the Hedgehog/GLI pathway has been identified in melanoma.
- GLI2 is a key activator of SLUG expression in melanoma cells, potentially representing its primary regulatory mechanism.
Related Concept Videos
Hedgehog Signaling Pathway
Role Of Notch Signalling In Intestinal Stem Cell Renewal
Direct cell-to-cell contact is needed for the activation of Notch signaling. The signal is initiated when a notch ligand binds to a receptor on an adjacent cell, also...
Notch Signaling Pathway
The Notch gene came into the limelight in 1914 after the discovery that its mutation in Drosophila melanogaster leads to a serrated (or "notched") wing margin phenotype. It was not...
TGF - β Signaling Pathway
Interactions Between Signaling Pathways
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
Regulation of Angiogenesis and Blood Supply

