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Polysome Fractionation and Analysis of Mammalian Translatomes on a Genome-wide Scale
Published on: May 17, 2014
Genetically Determined Levels of mTOR-Dependent Circulating Proteins and Risk of Multiple Sclerosis
Yao-Chen Zhang1,2,3, Ke-Yi Fan2,3, Qi Wang3,4,5
1Department of Rheumatology, The Second Hospital of Shanxi Medical University, Taiyuan, 030001, Shanxi Province, China.
Background:
Results from observational studies indicate an association between circulating levels of mammalian target of rapamycin (mTOR)-dependent circulating proteins and the risk of multiple sclerosis (MS). However, a causal association has not been fully elucidated. Mendelian randomization (MR) is used to overcome limitations inherent to observational studies, assess the causal association, and minimize bias due to confounding and reverse causation.
Methods:
To explore the causal association between seven mTOR-dependent proteins (AKT, RP-S6K, eIF4E-BP, eIF4A, eIF4E, eIF4G, and PKC-α) and MS, we obtained summary statistics from the genome-wide association study (GWAS) meta-analysis of the International Multiple Sclerosis Genetics Consortium (47,429 patients and 68,374 controls) and the INTERVAL study (genetic associations with 2994 plasma proteins from 3301 healthy individuals). MR analyses were conducted using inverse variance weighted, weighted median estimator, and MR-Egger regression methods/models. Sensitivity analyses were performed to ensure the reliability of the findings. Single nucleotide polymorphisms (SNPs) that are independent (r2 < 0.01) and strongly associated to minerals (p < 1e-5) were selected as instrumental variables.
Results:
The results of the MR analyses revealed that among the seven mTOR-dependent proteins selected for study, the circulating level of PKC-α (odds ratio [OR] 0.90, 95% confidence interval [CI] 0.82-0.98; P = 0.017) and RP-S6K (OR 1.12, 95% CI 1.00-1.25; P = 0.045) were associated with MS risk and that there was no sign of pleiotropy or heterogeneity. PKC-α was negatively related to MS, while RP-S6K was positively related to MS. No significant causation was found between the other proteins studied (AKT, eIF4E-BP, eIF4A, eIF4E, eIF4G) and MS.
Conclusion:
Molecules in the mTOR signaling pathway may bidirectionally regulate the occurrence and development of MS. PKC-α is a protective factor, while RP-S6K is a risk factor. Further explorations of pathways underlying the association between mTOR-dependent proteins and MS are required. PKC-α and RP-S6K might be used as future therapeutic targets for screening high-risk individuals and potentially improving opportunities for targeted prevention strategies.
Insights
Circulating levels of PKC-α may protect against multiple sclerosis (MS), while RP-S6K may increase MS risk. These findings suggest potential therapeutic targets for MS prevention and risk screening.
Area of Science:
- Genetics
- Immunology
- Biochemistry
Background:
- Observational studies suggest a link between mammalian target of rapamycin (mTOR)-dependent proteins and multiple sclerosis (MS) risk.
- A causal relationship between these proteins and MS remains unclear.
- Mendelian randomization (MR) is a robust method to investigate causal associations and mitigate bias.
Purpose of the Study:
- To investigate the causal association between seven mTOR-dependent proteins and the risk of developing MS.
- To determine if specific mTOR-dependent proteins act as risk or protective factors for MS.
Main Methods:
- Utilized genome-wide association study (GWAS) summary statistics from large MS and healthy individual cohorts.
- Employed multiple MR analysis methods (inverse variance weighted, weighted median, MR-Egger) to assess causality.
- Conducted sensitivity analyses to ensure the robustness and reliability of the findings.
Main Results:
- Elevated circulating levels of protein kinase C-alpha (PKC-α) were associated with a reduced risk of MS (OR 0.90, P=0.017).
- Increased circulating levels of ribosomal protein S6 kinase (RP-S6K) were associated with an increased risk of MS (OR 1.12, P=0.045).
- No significant causal associations were found for other studied mTOR-dependent proteins (AKT, eIF4E-BP, eIF4A, eIF4E, eIF4G).
Conclusions:
- The mTOR signaling pathway plays a bidirectional role in the development of MS.
- PKC-α acts as a protective factor, while RP-S6K acts as a risk factor for MS.
- PKC-α and RP-S6K represent potential therapeutic targets for MS risk stratification and targeted prevention strategies.
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