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Updated: Aug 8, 2025

A Mass Spectrometry-Based Approach to Identify Phosphoprotein Phosphatases and their Interactors
Published on: April 29, 2022
Two activating phosphorylation sites of Pbs2 MAP2K in the yeast HOG pathway are differentially dephosphorylated by
Kazuo Tatebayashi1, Haruo Saito2
1Laboratory of Molecular Genetics, Frontier Research Unit, Institute of Medical Science, The University of Tokyo, Tokyo, Japan; Division of Molecular Cell Signaling, Institute of Medical Science, The University of Tokyo, Tokyo, Japan; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Abstract:
To cope with an increased external osmolarity, the budding yeast Saccharomyces cerevisiae activates the Hog1 mitogen-activated protein kinase (MAPK) through the high-osmolarity glycerol (HOG) pathway, which governs adaptive responses to osmostress. In the HOG pathway, two apparently redundant upstream branches, termed SLN1 and SHO1, activate cognate MAP3Ks (MAPKK kinase) Ssk2/22 and Ste11, respectively. These MAP3Ks, when activated, phosphorylate and thus activate the Pbs2 MAP2K (MAPK kinase), which in turn phosphorylates and activates Hog1. Previous studies have shown that protein tyrosine phosphatases and the serine/threonine protein phosphatases type 2C negatively regulate the HOG pathway to prevent its excessive and inappropriate activation, which is detrimental to cell growth. The tyrosine phosphatases Ptp2 and Ptp3 dephosphorylate Hog1 at Tyr-176, whereas the protein phosphatase type 2Cs Ptc1 and Ptc2 dephosphorylate Hog1 at Thr-174. In contrast, the identities of phosphatases that dephosphorylate Pbs2 remained less clear. Here, we examined the phosphorylation status of Pbs2 at the activating phosphorylation sites Ser-514 and Thr-518 (S514 and T518) in various mutants, both in the unstimulated and osmostressed conditions. Thus, we found that Ptc1-Ptc4 collectively regulate Pbs2 negatively, but each Ptc acts differently to the two phosphorylation sites in Pbs2. T518 is predominantly dephosphorylated by Ptc1, while S514 can be dephosphorylated by any of Ptc1-4 to an appreciable extent. We also show that Pbs2 dephosphorylation by Ptc1 requires the adaptor protein Nbp2 that recruits Ptc1 to Pbs2, thus highlighting the complex processes involved in regulating adaptive responses to osmostress.
Insights
Budding yeast Saccharomyces cerevisiae uses the high-osmolarity glycerol (HOG) pathway to adapt to osmostress. Protein phosphatase 1 (Ptc1) and related phosphatases (Ptc2-4) negatively regulate this pathway by dephosphorylating the Pbs2 protein kinase.
Area of Science:
- Cellular signaling and stress response
- Molecular biology of yeast
- Protein phosphorylation and dephosphorylation
Background:
- The high-osmolarity glycerol (HOG) pathway in Saccharomyces cerevisiae is crucial for osmostress adaptation.
- This pathway involves the Hog1 mitogen-activated protein kinase (MAPK) activated by upstream MAP3Ks (Ssk2/22, Ste11) and MAP2K (Pbs2).
- Negative regulation by phosphatases is essential to prevent detrimental pathway overactivation.
Purpose of the Study:
- To identify the phosphatases responsible for dephosphorylating the Pbs2 MAP2K in the HOG pathway.
- To elucidate the specific roles of serine/threonine protein phosphatases type 2C (Ptc1-4) in regulating Pbs2 phosphorylation.
- To investigate the mechanism by which Ptc1 dephosphorylates Pbs2.
Main Methods:
- Analysis of Pbs2 phosphorylation status at Ser-514 and Thr-518 in various yeast mutants.
- Comparison of phosphorylation levels under unstimulated and osmostressed conditions.
- Investigation of the role of the adaptor protein Nbp2 in Ptc1-mediated Pbs2 dephosphorylation.
Main Results:
- The Ptc1-Ptc4 phosphatases collectively negatively regulate Pbs2.
- Ptc1 predominantly dephosphorylates Pbs2 at Thr-518, while Ptc1-4 can dephosphorylate Ser-514.
- Pbs2 dephosphorylation by Ptc1 requires the adaptor protein Nbp2, which facilitates Ptc1 recruitment to Pbs2.
Conclusions:
- The study identifies Ptc1-Ptc4 as key negative regulators of Pbs2 phosphorylation in the HOG pathway.
- Differential dephosphorylation of Pbs2 sites by specific Ptc phosphatases highlights regulatory complexity.
- Nbp2 acts as an adaptor, mediating Ptc1's access to Pbs2, underscoring intricate HOG pathway regulation.
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