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Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
Genetic hyperparameter optimization with Modified Scalable-Neighbourhood Component Analysis for breast cancer
Shtwai Alsubai1, Abdullah Alqahtani1, Mohemmed Sha1
1College of Computer Engineering and Sciences, Prince Sattam Bin AbdulAziz University, Al Kharj, Saudi Arabia.
This study introduces a novel non-parametric approach for breast cancer detection, optimizing feature embeddings for improved prediction rates. The method utilizes Deep Convolutional Neural Networks and advanced optimization techniques for more accurate early diagnosis.
Area of Science:
- Medical Imaging and Diagnostics
- Machine Learning in Healthcare
- Computational Biology
Background:
- Early breast cancer detection is crucial for improving patient survival rates and treatment efficacy.
- Traditional diagnostic methods can be time-consuming, and existing data mining techniques often lack optimal prediction accuracy.
- Parametric classifiers struggle with open-set scenarios and generalizing to new data with limited instances.
Purpose of the Study:
- To develop and implement a non-parametric strategy for breast cancer detection by optimizing feature embeddings.
- To enhance the prediction rate and scalability of breast cancer classification models.
- To address the limitations of conventional parametric classifiers in handling diverse and evolving datasets.
Main Methods:
- Utilized Deep Convolutional Neural Networks (Deep CNN) and Inception V3 for visual feature learning.
- Employed Neighbourhood Component Analysis (NCA) criteria for preserving neighborhood outlines in semantic space.
- Proposed Modified Scalable-Neighbourhood Component Analysis (MS-NCA) for non-linear feature fusion and optimized distance learning.
- Implemented Genetic-Hyper-parameter Optimization (G-HPO) to fine-tune XGBoost, Naïve Bayes, and Random Forest models.
Main Results:
- The proposed MS-NCA method enhances feature fusion by optimizing distance-learning objectives, enabling direct computation of inner feature products.
- G-HPO successfully determined optimized hyperparameters for XGBoost, Naïve Bayes, and Random Forest models.
- Analytical results confirmed significant improvements in the classification rate for identifying normal and affected breast cancer cases.
Conclusions:
- The non-parametric approach focusing on feature embedding optimization offers a scalable and effective alternative to traditional methods.
- The integration of MS-NCA and G-HPO provides a robust framework for accurate breast cancer prediction.
- This research contributes to advancing machine learning applications in early disease detection and diagnosis.
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