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A Method for Measuring RNA N6-methyladenosine Modifications in Cells and Tissues
Published on: December 5, 2016
N6-methyladenosine mediates Nrf2 protein expression involved in PM2.5-induced pulmonary fibrosis
Ding Ji1, Chenxi Hu2, Jie Ning3
1Department of Toxicology, School of Public Health, Hebei Medical University, Shijiazhuang 050017, PR China; Department of Otolaryngology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510080, PR China.
Abstract:
It has been reported that particulate matter with an aerodynamic diameter of <2.5 µm (PM2.5) could induce epithelial-mesenchymal transition (EMT)- and extracellular matrix (ECM)-related pulmonary fibrosis (PF). The transcription factor Nrf2 alleviated PM2.5-induced PF by antagonizing oxidative stress. The N6-methyladenosine (m6A) modification plays a significant role in the stress response. However, the effect of m6A modification on the mechanisms of Nrf2-mediated defense against PM2.5-induced PF remained unknown. Here, we explored the role and the underlying molecular mechanisms of m6A methylation of Nrf2 mRNA in PM2.5-induced PF. We established filtered air (FA), unfiltered air (UA), and concentrated PM2.5 air (CA) group mice model and 0, 50, and 100 μg/mL PM2.5-treated 16HBE cell models. The extent of lung fibrosis in mice and fibrosis indicators were detected by histopathological analysis, immunohistochemical staining and western blotting. The molecular mechanism of m6A-modified Nrf2 was demonstrated by m6A-methylated RNA immunoprecipitation (MeRIP), RNA immunoprecipitation (RIP), qRT-PCR and T3 ligase-based PCR. Our data showed that PM2.5 exposure for 16 weeks could induce pulmonary fibrosis and activate Nrf2 signaling pathway. m6A methyltransferase METTL3 was upregulated after PM2.5 treatment in vivo and in vitro. Moreover, METTL3 mediated m6A modification of Nrf2 mRNA and promoted Nrf2 translation in mice and 16HBE cells after PM2.5 exposure. Mechanistically, three m6A-modified sites (1317, 1376 and 935; numbered relative to the first nucleotide of 3'UTR) of Nrf2 mRNA were identified in PM2.5-treatment 16HBE cells. Furthermore, the m6A binding proteins YTHDF1/IGF2BP1 promoted Nrf2 translation by binding to m6A residues of Nrf2 mRNA. Our results revealed the mechanism of m6A mediated Nrf2 signaling pathway against oxidative stress, which affected the development of PM2.5-induced PF.
Insights
Particulate matter (PM2.5) causes lung fibrosis, but Nrf2 protects against it. This study reveals that N-methyladenosine (m6A) modification of Nrf2 mRNA, regulated by METTL3, enhances Nrf2
Area of Science:
- Environmental Health
- Molecular Biology
- Cellular Biology
Background:
- Particulate matter (PM2.5) is linked to pulmonary fibrosis (PF) via epithelial-mesenchymal transition (EMT) and extracellular matrix (ECM) remodeling.
- Nuclear factor erythroid 2-related factor 2 (Nrf2) mitigates PM2.5-induced PF by combating oxidative stress.
- N-methyladenosine (m6A) modification is implicated in cellular stress responses, but its role in Nrf2-mediated protection against PM2.5-induced PF is unclear.
Purpose of the Study:
- To investigate the role of m6A modification in Nrf2 mRNA within the context of PM2.5-induced pulmonary fibrosis.
- To elucidate the underlying molecular mechanisms by which m6A affects Nrf2 function and PM2.5-induced PF.
Main Methods:
- Establishment of mouse models exposed to filtered air (FA), unfiltered air (UA), and concentrated PM2.5 air (CA).
- In vitro models using 16HBE cells treated with varying concentrations of PM2.5.
- Assessment of lung fibrosis using histopathology, immunohistochemistry, and western blotting.
- Molecular analyses including m6A-methylated RNA immunoprecipitation (MeRIP), RNA immunoprecipitation (RIP), qRT-PCR, and T3 ligase-based PCR.
Main Results:
- PM2.5 exposure induced pulmonary fibrosis and activated the Nrf2 signaling pathway in mice.
- The m6A methyltransferase METTL3 was upregulated following PM2.5 exposure in both in vivo and in vitro models.
- METTL3 mediated m6A modification of Nrf2 mRNA, promoting its translation and Nrf2 pathway activation.
- Specific m6A sites on Nrf2 mRNA were identified, and m6A-binding proteins (YTHDF1/IGF2BP1) were shown to enhance Nrf2 translation.
Conclusions:
- m6A modification of Nrf2 mRNA plays a crucial role in the defense against PM2.5-induced pulmonary fibrosis.
- METTL3-mediated m6A modification and subsequent Nrf2 translation are key mechanisms in mitigating PM2.5-induced oxidative stress and PF development.

