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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
LncRNA NEAT1 and MALAT1 are involved in polycystic ovary syndrome pathogenesis by functioning as competing endogenous
Asmaa A ElMonier1, Noha A El-Boghdady1, Sally A Fahim2
1Department of Biochemistry, Faculty of Pharmacy, Cairo University, 11562, Cairo, Egypt.
Abstract:
Accumulating evidence has shown an abnormal expression of several non-coding RNAs in ovarian tissues which might be closely linked with the pathogenesis of PCOS. The aim of this study was to identify competing endogenous (ce) RNA network: long non-coding RNA (lncRNA), microRNA (miRNA) and their target genes: androgen receptor (AR), follistatin (FST) and insulin receptor substrate-2 (IRS-2), which are relevant to PCOS, to underline the molecular pathogenesis of PCOS and assist in early diagnosis and treatment. Bioinformatic analysis was performed to retrieve a ceRNA network: [lncRNA (NEAT1 and MALAT1) - miRNA (miR-30a-5p and miR-30d-5p) - mRNA (AR, FST and IRS-2)] linked to PCOS. Expression of the selected RNAs was examined by qPCR in peripheral blood leukocytes obtained from 73 PCOS patients (41 obese and 32 non-obese) and 31 healthy controls. PCOS patients showed significantly higher expression levels of NEAT1, miR-30a-5p, AR, FST and IRS-2, with significantly lower expression levels of MALAT1 and miR-30d-5p relative to controls especially in obese versus non-obese patients. Receiver operating characteristic (ROC) curve analysis indicated that most of the selected RNAs could serve as potential early diagnostic markers for PCOS with the highest efficiency obtained upon combining NEAT1 and miR-30d-5p or MALAT1 and miR-30a-5p with either of PCOS target genes. Moreover, all addressed RNAs had been proved as potential predictors of PCOS. The obtained data of ceRNA network raised the possibility that NEAT1 overexpression may increase the expression levels of AR, FST and IRS-2 by sponging miR-30d-5p, while low expression of MALAT1 may allow higher expression of the above genes via increasing miR-30a-5p, suggesting their involvement in PCOS pathogenesis and promising role for future diagnosis and targeted therapy.
Insights
This study identified a competing endogenous RNA network involving long non-coding RNAs (NEAT1, MALAT1), microRNAs (miR-30a-5p, miR-30d-5p), and target genes (AR, FST, IRS-2) linked to Polycystic Ovary Syndrome (PCOS) pathogenesis and potential early diagnosis.
Area of Science:
- Endocrinology
- Molecular Biology
- Genetics
Background:
- Polycystic Ovary Syndrome (PCOS) pathogenesis is linked to abnormal non-coding RNA expression.
- Identifying regulatory networks is crucial for understanding PCOS and developing diagnostic/therapeutic strategies.
Purpose of the Study:
- To identify a competing endogenous RNA (ceRNA) network involving long non-coding RNAs (lncRNAs), microRNAs (miRNAs), and their target messenger RNAs (mRNAs) relevant to PCOS.
- To investigate the diagnostic potential of these RNAs in PCOS patients.
Main Methods:
- Bioinformatic analysis to construct the ceRNA network: [lncRNA (NEAT1, MALAT1) - miRNA (miR-30a-5p, miR-30d-5p) - mRNA (AR, FST, IRS-2)].
- Quantitative Polymerase Chain Reaction (qPCR) to measure RNA expression in leukocytes from PCOS patients (n=73) and healthy controls (n=31).
- Receiver Operating Characteristic (ROC) curve analysis to assess diagnostic efficiency.
Main Results:
- PCOS patients exhibited significantly higher NEAT1, miR-30a-5p, AR, FST, and IRS-2 expression, and lower MALAT1 and miR-30d-5p expression compared to controls.
- Expression differences were more pronounced in obese PCOS patients.
- ROC analysis indicated potential diagnostic value for individual RNAs and combinations (e.g., NEAT1/miR-30d-5p, MALAT1/miR-30a-5p with target genes).
Conclusions:
- The identified ceRNA network suggests NEAT1 and MALAT1 play roles in PCOS pathogenesis by regulating AR, FST, and IRS-2 expression via miRNA sponging.
- These RNAs show promise as early diagnostic biomarkers and potential targets for PCOS therapy.
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