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Quantification and Whole Genome Characterization of SARS-CoV-2 RNA in Wastewater and Air Samples
Published on: June 30, 2023
SARS-CoV-2 Omicron variant shedding during respiratory activities.
Kai Sen Tan1, Sean Wei Xiang Ong2, Ming Hui Koh3
1Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, National University Health System, Singapore; Infectious Diseases Translational Research Program, Yong Loo Lin School of Medicine, National University of Singapore, National University Health System, Singapore; Biosafety Level 3 Core Facility, Yong Loo Lin School of Medicine, National University of Singapore, National University Health System, Singapore; Department of Otolaryngology, Yong Loo Lin School of Medicine, National University of Singapore, National University Health System, Singapore.
Omicron variants show similar SARS-CoV-2 RNA levels in aerosols compared to pre-Omicron variants, even in vaccinated individuals. Omicron infections may increase aerosol shedding during breathing and persist longer after symptom onset.
Area of Science:
- Virology
- Infectious Diseases
- Public Health
Background:
- The transition to COVID-19 endemicity necessitates understanding aerosol shedding of SARS-CoV-2 variants of concern (VOCs).
- Previous studies analyzed pre-Omicron variants, but Omicron's shedding patterns require further investigation for effective infection control.
- Seasonal circulation of VOCs demands updated public health strategies.
Purpose of the Study:
- To compare the aerosol shedding patterns of the Omicron VOC with pre-Omicron variants.
- To assess SARS-CoV-2 aerosol shedding during different respiratory activities.
- To inform infection control measures against currently circulating variants.
Main Methods:
- Aerosol samples (coarse and fine) were collected from 47 SARS-CoV-2 infected patients.
- Samples were analyzed during passive breathing, talking, and singing using RT-qPCR and virus culture.
- Comparison of shedding between Omicron and pre-Omicron variant infections.
Main Results:
- Comparable SARS-CoV-2 RNA copy numbers were found in aerosols of Omicron-infected patients versus pre-Omicron variants, irrespective of vaccination status.
- Omicron infections showed a slight increase in viral aerosol shedding during breathing.
- A higher likelihood of persistent aerosol shedding beyond 7 days post-onset was observed in Omicron cases.
Conclusions:
- Omicron exhibits distinct aerosol shedding characteristics compared to previous SARS-CoV-2 variants.
- Findings support continued layered public health interventions, even in highly vaccinated populations.
- Understanding variant-specific shedding is crucial for managing seasonal COVID-19 transmission.
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