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Updated: Aug 5, 2025

Non-invasive 3D-Visualization with Sub-micron Resolution Using Synchrotron-X-ray-tomography
Published on: May 27, 2008
Unmasking pipefish otolith using synchrotron-based scanning X-ray fluorescence
Vincent Haÿ1, Sophie Berland2, Kadda Medjoubi3
1UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d'Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005, Paris, France. vincent.hay@etu.sorbonne-universite.fr.
Scientists used synchrotron X-ray fluorescence to analyze fish otoliths, revealing migratory patterns in pipefish. This novel method chemically counts growth increments, overcoming limitations of traditional otolith analysis.
Area of Science:
- Ichthyology
- Paleoceanography
- Biogeochemistry
Background:
- Otoliths (fish ear stones) record individual growth and environmental history.
- Difficulties in discerning otolith increments hinder understanding of fish life history and migration for many species.
- Small, fragile otoliths of conservation-concern freshwater pipefish lack discernible growth increments, creating a significant knowledge gap.
Purpose of the Study:
- To develop and apply high-resolution elemental mapping of otoliths for detailed fish life history reconstruction.
- To investigate the migratory behavior and life history of freshwater pipefish species.
- To establish a novel method for chemically counting otolith growth increments, even in species with unclear patterns.
Main Methods:
- Synchrotron-based scanning X-ray fluorescence (sXRF) was employed for high spatial resolution elemental mapping of otoliths.
- Strontium (Sr) mapping was used to identify freshwater-marine transitions, confirming diadromous behavior.
- Sulphur (S) signal analysis was utilized to chemically count growth increments, independent of visual patterns.
Main Results:
- Confirmed that two tropical pipefish species are diadromous, transitioning between freshwater and marine environments.
- Element mapping revealed distinct migratory routes utilized by pipefish during their marine phase.
- A novel method for chemically counting otolith growth increments using sulphur signals was successfully established, overcoming reader bias and limitations of visual analysis.
Conclusions:
- Synchrotron-based sXRF elemental mapping provides unprecedented insights into fish migration and life history, even for species with challenging otoliths.
- The new sulphur-based method for counting growth increments offers a reliable approach for age estimation in species previously unquantifiable.
- This research advances the study of fish life traits and stock characterization, particularly for conservation-relevant species like pipefish.

