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Updated: Aug 5, 2025

Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
Published on: May 6, 2010
HiCube: interactive visualization of multiscale and multimodal Hi-C and 3D genome data
Tiantian Ye1, Yangyang Hu2, Sydney Pun2
1Department of Statistics, University of California Riverside, Riverside, CA 92521, United States.
Summary:
HiCube is a lightweight web application for interactive visualization and exploration of diverse types of genomics data at multiscale resolutions. Especially, HiCube displays synchronized views of Hi-C contact maps and 3D genome structures with user-friendly annotation and configuration tools, thereby facilitating the study of 3D genome organization and function.
Availability And Implementation:
HiCube is implemented in Javascript and can be installed via NPM. The source code is freely available at GitHub (https://github.com/wmalab/HiCube).
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