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Updated: Aug 5, 2025

Quasi-metagenomic Analysis of Salmonella from Food and Environmental Samples
Published on: October 25, 2018
Methodologic challenges and lessons learned through conducting a hospital-based Salmonella Javiana case-control study
Lisa B Stancill1, Madison G Ponder2, Alan C Kinlaw3
1Department of Infection Prevention, University of North Carolina Medical Center, Chapel Hill, NC.
Fruit cups were identified as the most likely source of a Salmonella Javiana outbreak linked to two North Carolina hospitals. This investigation highlights challenges in hospital-based foodborne illness outbreak studies.
Area of Science:
- Epidemiology
- Foodborne illness
- Infectious disease outbreaks
Background:
- Salmonellosis outbreaks can occur in healthcare settings, posing risks to vulnerable populations.
- Identifying the specific food source is crucial for controlling transmission and preventing future outbreaks.
Purpose of the Study:
- To determine the food item most likely contaminated with Salmonella Javiana during an outbreak affecting two North Carolina hospitals.
- To investigate the association between specific food exposures and salmonellosis in a hospital setting.
Main Methods:
- A 2:1 matched case-control study design was employed.
- Food histories were collected from hospital food orders, and patient medical records provided covariate data.
- Conditional logistic regression was used to estimate odds ratios (OR) for food exposures and salmonellosis.
Main Results:
- Twenty-one cases and 42 controls were included in the analysis.
- Fruit cups showed the strongest association with salmonellosis (adjusted OR = 7.9; 80% CI: 2.7, 23.6).
- Attack rate analyses supported fruit cups as a common source, despite variations in hospital-specific ORs.
Conclusions:
- Fruit cups were implicated as the likely source of the salmonellosis outbreak in the two hospitals.
- Methodological challenges, including control selection and reliance on food orders, were identified.
- Improving hospital policies and procedures is essential for effective outbreak investigations.
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