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Updated: Aug 4, 2025

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR RS-PCR
Published on: November 4, 2016
Genomic comparison of mecC-carrying methicillin-resistant Staphylococcus aureus from hedgehogs and humans in the
Cindy Dierikx1, Paul Hengeveld1, Sandra Witteveen1
1National Institute for Public Health and the Environment (RIVM), Centre for Infectious Disease Control, Bilthoven, The Netherlands.
Objectives:
MRSA carrying the mecC gene (mecC-MRSA) have been found in humans and animals worldwide. A high carriage rate of mecC-MRSA has been described among hedgehogs in different countries. We performed genomic comparison of mecC-MRSA from hedgehogs and humans using next-generation sequencing (NGS) to investigate possible zoonotic transmission in the Netherlands.
Methods:
Nasal swabs from hedgehogs (n = 105) were cultured using pre-enrichment and selective plates. Isolates were sequenced using Illumina NGS platforms. These data were compared with sequence data of mecC-MRSA (n = 62) from the Dutch national MRSA surveillance in humans.
Results:
Fifty hedgehogs were found to be MRSA positive, of which 48 carried mecC. A total of 60 mecC-MRSA isolates derived from 50 hedgehogs were compared with the human isolates. Fifty-nine mecC-MRSA from hedgehogs and all but one isolate from humans belonged to clonal complexes CC130 and CC1943. The mecC gene was located within the SCCmec XI element. Most mecC-MRSA did not carry other resistance genes besides mecC and blaZ. Two human isolates carried erm(C). Isolates differed in the presence of various virulence genes, which were linked to distinct STs and clonal complexes. Some isolates had up to 17 virulence genes, which underlines their pathogenic potential. No genetic clusters of hedgehog and human isolates were found.
Conclusions:
mecC-MRSA from hedgehogs and humans mainly belonged to the same two clonal complexes, indicating a common source. No firm evidence for recent zoonotic transmission was found. Further studies are needed to investigate the role of hedgehogs in the occurrence of mecC-MRSA in humans.
Insights
MecC-MRSA found in hedgehogs and humans in the Netherlands share common genetic backgrounds. However, genomic analysis did not reveal direct evidence of recent zoonotic transmission from hedgehogs to humans.
Area of Science:
- Microbiology
- Genomics
- Zoonotic Diseases
Background:
- Meticillin-resistant Staphylococcus aureus (MRSA) carrying the mecC gene (mecC-MRSA) are increasingly detected in both human and animal populations globally.
- Hedgehogs have shown a notably high prevalence of mecC-MRSA carriage in various international studies.
Purpose of the Study:
- To conduct a genomic comparison of mecC-MRSA isolates from hedgehogs and humans in the Netherlands.
- To investigate the potential for zoonotic transmission of mecC-MRSA between hedgehogs and humans.
Main Methods:
- Genomic sequencing of mecC-MRSA isolates from 105 hedgehog nasal swabs using Illumina NGS platforms.
- Comparison of hedgehog mecC-MRSA genomic data with 62 human mecC-MRSA isolates from Dutch national surveillance.
Main Results:
- Of 105 hedgehogs, 50 were MRSA positive, with 48 carrying mecC.
- Most hedgehog (59/60) and human isolates belonged to clonal complexes CC130 and CC1943, suggesting a shared origin.
- No distinct genetic clusters linking hedgehog and human isolates were identified, and differences in virulence genes were observed.
Conclusions:
- Hedgehog and human mecC-MRSA isolates in the Netherlands primarily belong to the same two clonal complexes, indicating a common source.
- The study found no definitive evidence of recent zoonotic transmission from hedgehogs to humans.
- Further research is necessary to fully elucidate the role of hedgehogs in the epidemiology of mecC-MRSA in human populations.
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