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Automated System for Single Molecule Fluorescence Measurements of Surface-immobilized Biomolecules
Published on: November 2, 2009
The radiative surface hopping (RSH) algorithm: Capturing fluorescence events in molecular systems within a
Manuel Pérez-Escribano1, Joanna Jankowska2, Giovanni Granucci3
1Department of Chemistry, Physical Chemistry and Quantum Chemistry Division, KU Leuven, 3001 Leuven, Belgium.
We developed a radiative surface hopping algorithm to model fluorescence in molecular dynamics. This method captures early fluorescence events and accurately reproduces experimental data for DCS photodeactivation.
Area of Science:
- Computational Chemistry
- Photochemistry
- Molecular Dynamics
Background:
- Modeling excited-state deactivation in molecules is crucial for understanding photophysical processes.
- Semi-classical non-adiabatic molecular dynamics often neglects radiative processes like fluorescence.
- Accurate simulation of fluorescence requires integrating radiative and non-radiative decay pathways.
Purpose of the Study:
- To introduce and validate a novel radiative surface hopping algorithm.
- To model the photodeactivation dynamics of trans-4-dimethylamino-4'-cyanostilbene (DCS) including fluorescence.
- To provide a comprehensive molecular movie of excited-state deactivation.
Main Methods:
- Developed a radiative surface hopping algorithm within a semi-classical non-adiabatic molecular dynamics framework.
- Employed a semi-empirical quantum mechanical/molecular mechanical (QM/MM) Hamiltonian.
- Simulated dynamics for hundreds of picoseconds in both gas and solution phases (isopropyl ether).
Main Results:
- Successfully captured initial fluorescence events in DCS.
- Reproduced experimental fluorescence lifetime and quantum yield, particularly in polar solvents.
- Analysis of emissive species geometry ruled out a twisted intramolecular charge transfer (TICT) state as the cause of dual emission.
Conclusions:
- The radiative surface hopping algorithm enables accurate modeling of fluorescence in molecular dynamics.
- The method provides insights into excited-state deactivation pathways and photophysical properties.
- This approach facilitates theoretical studies of early fluorescence events in molecular systems.
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