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Updated: Aug 4, 2025

Silencing of BRCA2 to Identify Novel BRCA2-regulated Biological Functions in Cultured Human Cells
Published on: August 12, 2015
BRCA1-methylated triple negative breast cancers previously exposed to neoadjuvant chemotherapy form RAD51 foci and
Carolina Velazquez1, Esin Orhan1, Imene Tabet1
1Institut de Recherche en Cancérologie de Montpellier, IRCM U1194, Montpellier University, INSERM, ICM, CNRS, Montpellier, France.
Background:
About 15% of Triple-Negative-Breast-Cancer (TNBC) present silencing of the BRCA1 promoter methylation and are assumed to be Homologous Recombination Deficient (HRD). BRCA1-methylated (BRCA1-Me) TNBC could, thus, be eligible to treatment based on PARP-inhibitors or Platinum salts. However, their actual HRD status is discussed, as these tumors are suspected to develop resistance after chemotherapy exposure.
Methods:
We interrogated the sensitivity to olaparib vs. carboplatin of 8 TNBC Patient-Derived Xenografts (PDX) models. Four PDX corresponded to BRCA1-Me, of which 3 were previously exposed to NeoAdjuvant-Chemotherapy (NACT). The remaining PDX models corresponded to two BRCA1-mutated (BRCA1-Mut) and two BRCA1-wild type PDX that were respectively included as positive and negative controls. The HRD status of our PDX models was assessed using both genomic signatures and the functional BRCA1 and RAD51 nuclear foci formation assay. To assess HR restoration associated with olaparib resistance, we studied pairs of BRCA1 deficient cell lines and their resistant subclones.
Results:
The 3 BRCA1-Me PDX that had been exposed to NACT responded poorly to olaparib, likewise BRCA1-WT PDX. Contrastingly, 3 treatment-naïve BRCA1-deficient PDX (1 BRCA1-Me and 2 BRCA1-mutated) responded to olaparib. Noticeably, the three olaparib-responsive PDX scored negative for BRCA1- and RAD51-foci, whereas all non-responsive PDX models, including the 3 NACT-exposed BRCA1-Me PDX, scored positive for RAD51-foci. This suggested HRD in olaparib responsive PDX, while non-responsive models were HR proficient. These results were consistent with observations in cell lines showing a significant increase of RAD51-foci in olaparib-resistant subclones compared with sensitive parental cells, suggesting HR restoration in these models.
Conclusion:
Our results thus support the notion that the actual HRD status of BRCA1-Me TNBC, especially if previously exposed to chemotherapy, may be questioned and should be verified using the BRCA1- and RAD51-foci assay.
Insights
Triple-Negative-Breast-Cancer (TNBC) with BRCA1 promoter methylation may not be homologous recombination deficient (HRD) after chemotherapy. The BRCA1 and RAD51 foci assay is crucial for verifying HRD status in these patients.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Approximately 15% of Triple-Negative-Breast-Cancer (TNBC) exhibit BRCA1 promoter methylation, suggesting Homologous Recombination Deficiency (HRD).
- BRCA1-methylated (BRCA1-Me) TNBC are candidates for PARP-inhibitors or platinum-based therapies.
- Concerns exist regarding the actual HRD status and potential chemotherapy resistance in BRCA1-Me TNBC.
Purpose of the Study:
- To investigate the sensitivity of BRCA1-methylated TNBC models to olaparib and carboplatin.
- To assess the homologous recombination deficiency (HRD) status in patient-derived xenografts (PDX) and cell lines.
- To explore HR restoration mechanisms associated with olaparib resistance.
Main Methods:
- Evaluated olaparib and carboplatin sensitivity in 8 TNBC PDX models, including BRCA1-methylated, BRCA1-mutated, and BRCA1-wild type.
- Assessed HRD status using genomic signatures and BRCA1/RAD51 nuclear foci assays.
- Studied HR restoration in BRCA1-deficient cell lines and their resistant subclones.
Main Results:
- Three NACT-exposed BRCA1-Me PDX models showed poor response to olaparib, similar to BRCA1-WT PDX.
- Treatment-naïve BRCA1-deficient PDX (1 BRCA1-Me, 2 BRCA1-mutated) responded to olaparib.
- Olaparib-responsive PDX were negative for BRCA1/RAD51 foci, while non-responsive PDX were positive for RAD51 foci, indicating HRD in responsive and HR proficiency in non-responsive models.
- Olaparib-resistant cell lines exhibited increased RAD51 foci, suggesting HR restoration.
Conclusions:
- The HRD status of BRCA1-methylated TNBC, particularly after chemotherapy exposure, warrants careful evaluation.
- The BRCA1 and RAD51 foci assay is a valuable tool for verifying HRD status in BRCA1-methylated TNBC.
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