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Updated: Aug 4, 2025

Assessment of Child Anthropometry in a Large Epidemiologic Study
Published on: February 2, 2017
The Genetic Landscape of Children Born Small for Gestational Age with Persistent Short Stature
Ledjona Toni1, Lukas Plachy1, Petra Dusatkova1
1Department of Paediatrics, 2nd Faculty of Medicine, Charles University in Prague and Motol University Hospital, Prague, Czechia.
Insights
Genetic factors were identified in 42% of children who remained short after being born small for gestational age. These genetic causes impact growth hormone (GH) and thyroid axes, intracellular processes, and growth plate development.
Area of Science:
- Pediatric Endocrinology
- Human Genetics
- Molecular Biology
Background:
- 10-15% of children born small for gestational age (SGA) do not experience a growth spurt and remain short (SGA-SS).
- The genetic underpinnings of SGA-SS are largely unknown, necessitating further investigation.
- This study focuses on a large single-center cohort to identify genetic causes of SGA-SS.
Purpose of the Study:
- To investigate the genetic aetiologies contributing to short stature in children born small for gestational age (SGA-SS).
- To elucidate the molecular mechanisms underlying the failure to catch up growth in a cohort of SGA-SS patients.
- To enhance the diagnostic yield for genetic causes of SGA-SS.
Main Methods:
- Included 176 children with SGA-SS from a cohort of 820 growth hormone-treated patients with available DNA (child and both parents).
- Employed targeted genetic testing for suspected disorders and MS-MLPA for Silver-Russell syndrome.
- Utilized whole-exome sequencing or a targeted gene panel for cases with unknown genetic etiology, classifying variants per ACMG guidelines.
Main Results:
- Identified pathogenic or likely pathogenic gene variants in 74/176 (42%) of children with SGA-SS.
- Discovered genetic variants affecting pituitary development, GH-IGF-1/IGF-2 axis, thyroid axis, cartilaginous matrix, and paracrine chondrocyte regulation.
- Also found variants impacting intracellular processes, SHOX deficiency, Silver-Russell syndrome, and chromosomal aberrations.
Conclusions:
- The study achieved a high diagnostic yield, revealing a complex genetic landscape for SGA-SS.
- Highlights the critical role of the growth plate, GH-IGF-1 axis, thyroid axis, and intracellular signaling pathways in SGA-SS.
- Provides new insights into the genetic basis of SGA-SS, aiding in diagnosis and understanding.
Introduction:
Among children born small for gestational age, 10-15% fail to catch up and remain short (SGA-SS). The underlying mechanisms are mostly unknown. We aimed to decipher genetic aetiologies of SGA-SS within a large single-centre cohort.
Methods:
Out of 820 patients treated with growth hormone (GH), 256 were classified as SGA-SS (birth length and/or birth weight <-2 SD for gestational age and life-minimum height <-2.5 SD). Those with the DNA triplet available (child and both parents) were included in the study (176/256). Targeted testing (karyotype/FISH/MLPA/specific Sanger sequencing) was performed if a specific genetic disorder was clinically suggestive. All remaining patients underwent MS-MLPA to identify Silver-Russell syndrome, and those with unknown genetic aetiology were subsequently examined using whole-exome sequencing or targeted panel of 398 growth-related genes. Genetic variants were classified using ACMG guidelines.
Results:
The genetic aetiology was elucidated in 74/176 (42%) children. Of these, 12/74 (16%) had pathogenic or likely pathogenic (P/LP) gene variants affecting pituitary development (LHX4, OTX2, PROKR2, PTCH1, POU1F1), the GH-IGF-1 or IGF-2 axis (GHSR, IGFALS, IGF1R, STAT3, HMGA2), 2/74 (3%) the thyroid axis (TRHR, THRA), 17/74 (23%) the cartilaginous matrix (ACAN, various collagens, FLNB, MATN3), and 7/74 (9%) the paracrine chondrocyte regulation (FGFR3, FGFR2, NPR2). In 12/74 (16%), we revealed P/LP affecting fundamental intracellular/intranuclear processes (CDC42, KMT2D, LMNA, NSD1, PTPN11, SRCAP, SON, SOS1, SOX9, TLK2). SHOX deficiency was found in 7/74 (9%), Silver-Russell syndrome in 12/74 (16%) (11p15, UPD7), and miscellaneous chromosomal aberrations in 5/74 (7%) children.
Conclusions:
The high diagnostic yield sheds a new light on the genetic landscape of SGA-SS, with a central role for the growth plate with substantial contributions from the GH-IGF-1 and thyroid axes and intracellular regulation and signalling.
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