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Related Experiment Video

Updated: Aug 4, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
05:47

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems

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Interpretable AI for bio-medical applications.

Anoop Sathyan1, Abraham Itzhak Weinberg2, Kelly Cohen1

  • 1Department of Aerospace Engineering, University of Cincinnati, Cincinnati, OH 45231, USA.

Complex Engineering Systems (Alhambra, Calif.)
|April 7, 2023
PubMed
Summary

This study explains deep neural network predictions for breast cancer using Local Interpretable Model-Agnostic Explanations (LIME) and Shapley Additive exPlanations (SHAP). Both methods offer valuable insights into feature importance for classifying masses as benign or malignant.

Keywords:
Explainable AILIMESHAPneural networks

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Area of Science:

  • Artificial Intelligence
  • Machine Learning
  • Medical Informatics

Background:

  • Deep neural networks (DNNs) achieve high accuracy in medical diagnoses but often lack interpretability.
  • Understanding the factors influencing DNN predictions is crucial for clinical trust and adoption.
  • Explainability tools are essential for demystifying complex model behaviors.

Purpose of the Study:

  • To apply Local Interpretable Model-Agnostic Explanations (LIME) and Shapley Additive exPlanations (SHAP) to interpret a DNN's breast cancer predictions.
  • To compare the insights provided by LIME and SHAP in explaining individual predictions.
  • To enhance the transparency of DNN models in medical applications.

Main Methods:

  • A deep neural network was trained on the UCI Breast Cancer Wisconsin dataset for mass classification (benign/malignant).
  • Local Interpretable Model-Agnostic Explanations (LIME) was employed to explain individual predictions.
  • Shapley Additive exPlanations (SHAP) was utilized to provide both local and global explanations.

Main Results:

  • Both LIME and SHAP successfully explained individual DNN predictions, highlighting key features influencing classification.
  • SHAP provided a comprehensive view of feature impacts on predictions, offering a more holistic understanding.
  • Commonalities in explanations derived from LIME and SHAP were identified, reinforcing the findings.

Conclusions:

  • LIME and SHAP are effective tools for increasing the interpretability of deep neural networks in medical contexts.
  • The application of these explainability methods enhances trust and understanding of AI-driven diagnostic tools.
  • The methodology is adaptable to various DNN architectures and applications beyond breast cancer detection.