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Origin and Evolution of RAS Membrane Targeting
Antonio García-España1, Mark R Philips2
1Bionos Biotech SL; Biopolo Hospital La Fe, Valencia, Spain.
Abstract:
KRAS, HRAS and NRAS proto-oncogenes belong to a family of 40 highly homologous genes, which in turn are a subset of a superfamily of >160 genes encoding small GTPases. RAS proteins consist of a globular G-domain (aa1-166) and a 22-23 aa unstructured hypervariable region (HVR) that mediates membrane targeting. The evolutionary origins of the RAS isoforms, their HVRs and alternative splicing of the KRAS locus has not been explored. We found that KRAS is basal to the RAS proto-oncogene family and its duplication generated HRAS in the common ancestor of vertebrates. In a second round of duplication HRAS generated NRAS and KRAS generated an additional RAS gene we have designated KRASBL, absent in mammals and birds. KRAS4A arose through a duplication and insertion of the 4th exon of NRAS into the 3rd intron of KRAS. We found evolutionary conservation of a short polybasic region (PBR1) in HRAS, NRAS and KRAS4A, a second polybasic region (PBR2) in KRAS4A, two neutralized basic residues (NB) and a serine in KRAS4B and KRASBL, and a modification of the CaaX motif in vertebrates with farnesyl rather than geranylgeranyl polyisoprene lipids, suggesting that a less hydrophobic membrane anchor is critical to RAS protein function. The persistence of four RAS isoforms through >400 million years of evolution argues strongly for differential function.
Insights
The study traces the evolutionary history of RAS proto-oncogenes, revealing KRAS as the ancestral gene. Gene duplications led to HRAS, NRAS, and KRASBL, with specific exon reshuffling creating KRAS4A.
Area of Science:
- Evolutionary biology
- Molecular genetics
- Cellular signaling
Background:
- RAS proto-oncogenes (KRAS, HRAS, NRAS) are critical regulators of cell signaling.
- Their evolutionary origins and the functional significance of their isoforms remain largely unexplored.
- RAS proteins feature a G-domain and a hypervariable region (HVR) for membrane association.
Purpose of the Study:
- To investigate the evolutionary history of RAS isoforms and their hypervariable regions.
- To understand the molecular mechanisms driving RAS gene diversification.
- To explore the functional implications of evolutionary changes in RAS proteins.
Main Methods:
- Phylogenetic analysis of RAS gene family evolution.
- Comparative genomics to identify gene duplication and exon shuffling events.
- Bioinformatic analysis of conserved protein domains and motifs.
Main Results:
- KRAS is identified as the basal RAS proto-oncogene, with HRAS arising from its duplication.
- Subsequent duplications generated NRAS and KRASBL, while KRAS4A resulted from exon duplication and insertion.
- Conserved regions (PBR1, PBR2, NB) and modified C-terminal motifs suggest adaptation to specific membrane anchors.
Conclusions:
- The evolutionary trajectory of RAS genes highlights a complex history of duplication and rearrangement.
- Conserved structural features across RAS isoforms suggest critical, conserved functions.
- Divergence in membrane anchoring mechanisms points to specialized roles for different RAS proteins.
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