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Updated: Aug 3, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Hurdles to Artificial Intelligence Deployment: Noise in Schemas and "Gold" Labels
Mohamed Abdalla1, Benjamin Fine1
1Institute for Better Health, Trillium Health Partners, Mississauga, Ontario, Canada (M.A., B.F.); and Centre for Information Technology, Department of Computer Science (M.A.), and Department of Medical Imaging (B.F.), University of Toronto, 40 St George St, Room 4283, Toronto, ON, Canada M5S 2E4.
Abstract:
Despite frequent reports of imaging artificial intelligence (AI) that parallels human performance, clinicians often question the safety and robustness of AI products in practice. This work explores two underreported sources of noise that negatively affect imaging AI: (a) variation in labeling schema definitions and (b) noise in the labeling process. First, the overlap between the schemas of two publicly available datasets and a third-party vendor are compared, showing there is low agreement (<50%) between them. The authors also highlight the problem of label inconsistency, where different annotation schemas are selected for the same clinical prediction task; this results in inconsistent use of medical ontologies through intermingling or duplicate observations and diseases. Second, the individual radiologist annotations for the CheXpert test set are used to quantify noise in the labeling process. The analysis demonstrated that label noise varies by class, as agreement was high for pneumothorax and medical devices (percent agreement > 90%). Among low agreement classes (pneumonia, consolidation), the labels assigned as "ground truth" were unreliable, suggesting that the result of majority voting is highly dependent on which group of radiologists is assigned to annotation. Noise in labeling schemas and gold label annotations are pervasive in medical imaging classification and affect downstream clinical deployment. Possible solutions (eg, changes to task design, annotation methods, and model training) and their potential to improve trust in clinical AI are discussed. Keywords: Radiology AI, Dataset Creation, Noise in Datasets Supplemental material is available for this article. © RSNA, 2023 See also the commentary by Ursprung and Woitek in this issue.
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