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Ripply suppresses Tbx6 to induce dynamic-to-static conversion in somite segmentation
Taijiro Yabe1,2,3, Koichiro Uriu4, Shinji Takada5,6,7
1Exploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji-cho, Okazaki, Aichi, 444-8787, Japan. yabe@nibb.ac.jp.
Nature Communications
|April 13, 2023
Summary
The Ripply/Tbx6 molecular machinery converts dynamic clock gene oscillations into static somite patterns in zebrafish embryos. This process is crucial for somitogenesis, ensuring proper embryonic development.
Area of Science:
- Developmental Biology
- Molecular Biology
- Genetics
Background:
- Embryonic development relies on the precise formation of somites, segmented blocks of tissue.
- Somitogenesis involves dynamic oscillatory gene expression in the presomitic mesoderm.
- The mechanism converting dynamic oscillations to static somite patterns remains largely unknown.
Purpose of the Study:
- To elucidate the molecular mechanism responsible for converting dynamic gene oscillations into static somite patterns.
- To investigate the role of the Ripply/Tbx6 machinery in somitogenesis.
Main Methods:
- Utilized zebrafish embryos as a model organism.
- Investigated gene and protein expression patterns of clock genes, Ripply, and Tbx6.
- Employed mathematical modeling and simulations to analyze the molecular network dynamics.
Main Results:
- Ripply1/Ripply2 proteins mediate Tbx6 protein removal, defining somite boundaries and halting clock gene expression.
- Ripply expression is regulated by clock oscillations and an Erk signaling gradient.
- Ripply-induced Tbx6 suppression is sustained, enabling complete somite boundary formation.
Conclusions:
- The Ripply/Tbx6 machinery is a key regulator in the dynamic-to-static conversion during somitogenesis.
- Sustained Tbx6 suppression by Ripply is essential for successful somite pattern formation.
- Mathematical modeling confirms the proposed molecular network's ability to reproduce this conversion.

